RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ERLIN1O75477 346 aa12.36□□□□□ -0.43
CLIP1-201ENST00000302528 USP8P40818 1118 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 STK38Q15208 465 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 TSPYL4Q9UJ04 414 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 EIF3JO75822 258 aaKnown RBP12.35□□□□□ -0.43
CLIP1-201ENST00000302528 HMGN5P82970 282 aaKnown RBP12.35□□□□□ -0.43
CLIP1-201ENST00000302528 ZNF396Q96N95 335 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-201ENST00000302528 TSPY26PQ9H489 355 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLIP1-201ENST00000302528 KIF7Q2M1P5 1343 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 STIM1Q13586 685 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 CNTROBQ8N137 903 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 L3MBTL2Q969R5 705 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 APAF1O14727 1248 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 CDC45O75419 566 aa12.35□□□□□ -0.43
CLIP1-201ENST00000302528 SEPT11Q9NVA2 429 aaKnown RBP12.35□□□□□ -0.43
CLIP1-201ENST00000302528 FAM193AP78312 1265 aa12.34□□□□□ -0.43
CLIP1-201ENST00000302528 PSME1Q06323 249 aa12.34□□□□□ -0.43
CLIP1-201ENST00000302528 ATP2B2Q01814 1243 aa12.34□□□□□ -0.43
CLIP1-201ENST00000302528 CAVIN1Q6NZI2 390 aaKnown RBP12.34□□□□□ -0.43
CLIP1-201ENST00000302528 RAPGEF4Q8WZA2 1011 aa12.34□□□□□ -0.43
CLIP1-201ENST00000302528 MBD3O95983 291 aa12.33□□□□□ -0.43
CLIP1-201ENST00000302528 UBTFL1P0CB47 393 aaPredicted RBP12.33□□□□□ -0.43
CLIP1-201ENST00000302528 PPM1FP49593 454 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-201ENST00000302528 CARMIL2Q6F5E8 1435 aa12.33□□□□□ -0.44
CLIP1-201ENST00000302528 NF2P35240 595 aa12.33□□□□□ -0.44
CLIP1-201ENST00000302528 SPC24Q8NBT2 197 aa12.33□□□□□ -0.44
CLIP1-201ENST00000302528 PDCP20941 246 aa12.33□□□□□ -0.44
CLIP1-201ENST00000302528 DNAJC2Q99543 621 aaKnown RBP12.33□□□□□ -0.44
CLIP1-201ENST00000302528 DACH1Q9UI36 760 aa12.33□□□□□ -0.44
CLIP1-201ENST00000302528 CEBPZQ03701 1054 aaKnown RBP12.33□□□□□ -0.44
CLIP1-201ENST00000302528 JMYQ8N9B5 988 aa12.33□□□□□ -0.44
CLIP1-201ENST00000302528 DHX8Q14562 1220 aaKnown RBP12.32□□□□□ -0.44
CLIP1-201ENST00000302528 MINK1Q8N4C8 1332 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-201ENST00000302528 FMN1Q68DA7 1419 aa12.32□□□□□ -0.44
CLIP1-201ENST00000302528 CCDC91Q7Z6B0 441 aa12.32□□□□□ -0.44
CLIP1-201ENST00000302528 FAM177BA6PVY3 158 aa12.31□□□□□ -0.44
CLIP1-201ENST00000302528 RBM10P98175 930 aaKnown RBP12.31□□□□□ -0.44
CLIP1-201ENST00000302528 IQCEQ6IPM2 695 aa12.31□□□□□ -0.44
CLIP1-201ENST00000302528 LRRFIP2Q9Y608 721 aaKnown RBP12.31□□□□□ -0.44
CLIP1-201ENST00000302528 HNRNPMP52272 730 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLIP1-201ENST00000302528 GNAI1P63096 354 aa12.31□□□□□ -0.44
CLIP1-201ENST00000302528 FAM177A1Q8N128 213 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-201ENST00000302528 GIMAP7Q8NHV1 300 aa12.31□□□□□ -0.44
CLIP1-201ENST00000302528 FIBPO43427 364 aa12.3□□□□□ -0.44
CLIP1-201ENST00000302528 ST20-MTHFSA0A0A6YYL1 179 aa12.3□□□□□ -0.44
CLIP1-201ENST00000302528 GOLGA6L10A0A0M3HER8 536 aa12.3□□□□□ -0.44
CLIP1-201ENST00000302528 LRRCC1Q9C099 1032 aa12.3□□□□□ -0.44
CLIP1-201ENST00000302528 SSR1P43307 286 aaKnown RBP12.3□□□□□ -0.44
CLIP1-201ENST00000302528 PRPF40AO75400 957 aaKnown RBP12.29□□□□□ -0.44
CLIP1-201ENST00000302528 STAMBPO95630 424 aa12.29□□□□□ -0.44
CLIP1-201ENST00000302528 MATR3P43243 847 aaKnown RBP eCLIP12.29□□□□□ -0.44
CLIP1-201ENST00000302528 MPHOSPH10O00566 681 aaKnown RBP12.29□□□□□ -0.44
CLIP1-201ENST00000302528 VGFO15240 615 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-201ENST00000302528 FHOD3Q2V2M9 1422 aa12.29□□□□□ -0.44
CLIP1-201ENST00000302528 SOGA3Q5TF21 947 aa12.29□□□□□ -0.44
CLIP1-201ENST00000302528 JAKMIP3Q5VZ66 844 aa12.29□□□□□ -0.44
CLIP1-201ENST00000302528 SLC26A8Q96RN1 970 aa12.29□□□□□ -0.44
CLIP1-201ENST00000302528 TRAK2O60296 914 aa12.29□□□□□ -0.44
CLIP1-201ENST00000302528 NFKBIBQ15653 356 aa12.28□□□□□ -0.44
CLIP1-201ENST00000302528 CCDC102AQ96A19 550 aa12.28□□□□□ -0.44
CLIP1-201ENST00000302528 TRIM22Q8IYM9 498 aa12.28□□□□□ -0.44
CLIP1-201ENST00000302528 TAF4BQ92750 862 aa12.28□□□□□ -0.44
CLIP1-201ENST00000302528 HIP1O00291 1037 aa12.28□□□□□ -0.44
CLIP1-201ENST00000302528 IBSPP21815 317 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-201ENST00000302528 SSBP05455 408 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLIP1-201ENST00000302528 TRIM21P19474 475 aaKnown RBP12.28□□□□□ -0.44
CLIP1-201ENST00000302528 NEK4P51957 841 aa12.28□□□□□ -0.44
CLIP1-201ENST00000302528 MAP2K1Q02750 393 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-201ENST00000302528 NLRP2Q9NX02 1062 aa12.28□□□□□ -0.44
CLIP1-201ENST00000302528 CBFA2T2O43439 604 aa12.27□□□□□ -0.44
CLIP1-201ENST00000302528 CEP63Q96MT8 703 aa12.27□□□□□ -0.44
CLIP1-201ENST00000302528 BMP2KQ9NSY1 1161 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-201ENST00000302528 PPP1R1BQ9UD71 204 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-201ENST00000302528 UACAQ9BZF9 1416 aa12.27□□□□□ -0.44
CLIP1-201ENST00000302528 GNL3LQ9NVN8 582 aaKnown RBP12.27□□□□□ -0.45
CLIP1-201ENST00000302528 SYNJ1O43426 1573 aa12.27□□□□□ -0.45
CLIP1-201ENST00000302528 CCDC192P0DO97 292 aa12.27□□□□□ -0.45
CLIP1-201ENST00000302528 ANAPC15P60006 121 aa12.27□□□□□ -0.45
CLIP1-201ENST00000302528 SURF6O75683 361 aaKnown RBP12.27□□□□□ -0.45
CLIP1-201ENST00000302528 MCM2P49736 904 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 TTC39AQ5SRH9 613 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 FANCIQ9NVI1 1328 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 ME1P48163 572 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 ERC1Q8IUD2 1116 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 TNMDQ9H2S6 317 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 CETN2P41208 172 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 KIF6Q6ZMV9 814 aa12.26□□□□□ -0.45
CLIP1-201ENST00000302528 RRBP1Q9P2E9 1410 aaKnown RBP12.26□□□□□ -0.45
CLIP1-201ENST00000302528 POTEJP0CG39 1038 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 RUNDC1Q96C34 613 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 NOL7Q9UMY1 257 aaKnown RBP12.25□□□□□ -0.45
CLIP1-201ENST00000302528 ZBED9Q6R2W3 1325 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 CCDC158Q5M9N0 1113 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 PPM1EQ8WY54 764 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 CCDC69A6NI79 296 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.25□□□□□ -0.454e-6■■□□□ 12.7
CLIP1-201ENST00000302528 CNNM1Q9NRU3 951 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 CCDC57Q2TAC2 916 aa12.25□□□□□ -0.45
CLIP1-201ENST00000302528 NACAP1Q9BZK3 213 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms