RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FAM98CQ17RN3 349 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-201ENST00000301897 NGDNQ8NEJ9 315 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-201ENST00000301897 DCAF11Q8TEB1 546 aa21.67■■□□□ 1.06
CCDC88B-201ENST00000301897 PRR36Q9H6K5 1346 aa21.66■■□□□ 1.06
CCDC88B-201ENST00000301897 KDM2AQ9Y2K7 1162 aa21.66■■□□□ 1.06
CCDC88B-201ENST00000301897 ITSN1Q15811 1721 aa21.66■■□□□ 1.06
CCDC88B-201ENST00000301897 LRP5O75197 1615 aa21.65■■□□□ 1.06
CCDC88B-201ENST00000301897 SPATA31A5Q5VU36 1347 aa21.64■■□□□ 1.05
CCDC88B-201ENST00000301897 SPATA31A7Q8IWB4 1347 aa21.64■■□□□ 1.05
CCDC88B-201ENST00000301897 PAK3O75914 559 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-201ENST00000301897 PRDM11Q9NQV5 511 aa21.63■■□□□ 1.05
CCDC88B-201ENST00000301897 RGPD1P0DJD0 1748 aa21.63■■□□□ 1.05
CCDC88B-201ENST00000301897 CRYBG1Q9Y4K1 1723 aa21.63■■□□□ 1.05
CCDC88B-201ENST00000301897 HRCP23327 699 aa21.61■■□□□ 1.05
CCDC88B-201ENST00000301897 ARHGEF28Q8N1W1 1705 aaKnown RBP21.6■■□□□ 1.05
CCDC88B-201ENST00000301897 ATP7BP35670 1465 aa21.6■■□□□ 1.05
CCDC88B-201ENST00000301897 NUDT16Q96DE0 195 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-201ENST00000301897 THSD7AQ9UPZ6 1657 aa21.59■■□□□ 1.05
CCDC88B-201ENST00000301897 DISP2A7MBM2 1401 aa21.58■■□□□ 1.05
CCDC88B-201ENST00000301897 KIAA0232Q92628 1395 aa21.55■■□□□ 1.04
CCDC88B-201ENST00000301897 SPATA31A1Q5TZJ5 1347 aa21.55■■□□□ 1.04
CCDC88B-201ENST00000301897 EN1Q05925 392 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-201ENST00000301897 PHRF1Q9P1Y6 1649 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-201ENST00000301897 POLR3AO14802 1390 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-201ENST00000301897 PSDA5PKW4 1024 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-201ENST00000301897 FAM196AQ6ZSG2 479 aa21.53■■□□□ 1.04
CCDC88B-201ENST00000301897 CDK19Q9BWU1 502 aa21.53■■□□□ 1.04
CCDC88B-201ENST00000301897 CCDC61Q9Y6R9 512 aa21.52■■□□□ 1.04
CCDC88B-201ENST00000301897 TNS1Q9HBL0 1735 aaKnown RBP21.52■■□□□ 1.03
CCDC88B-201ENST00000301897 KIAA1210Q9ULL0 1709 aa21.52■■□□□ 1.03
CCDC88B-201ENST00000301897 TOPAZ1Q8N9V7 1692 aa21.5■■□□□ 1.03
CCDC88B-201ENST00000301897 PLEKHG3A1L390 1219 aa21.5■■□□□ 1.03
CCDC88B-201ENST00000301897 CHRNA2Q15822 529 aa21.5■■□□□ 1.03
CCDC88B-201ENST00000301897 FAM182BQ5T319 152 aa21.5■■□□□ 1.03
CCDC88B-201ENST00000301897 STRN4Q9NRL3 753 aa21.5■■□□□ 1.03
CCDC88B-201ENST00000301897 ACEP12821 1306 aa21.5■■□□□ 1.03
CCDC88B-201ENST00000301897 PARD3Q8TEW0 1356 aa21.49■■□□□ 1.03
CCDC88B-201ENST00000301897 ZC3H6P61129 1189 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-201ENST00000301897 NBPF8Q3BBV2 869 aa21.49■■□□□ 1.03
CCDC88B-201ENST00000301897 EVA1CP58658 441 aa21.48■■□□□ 1.03
CCDC88B-201ENST00000301897 BARGINQ6ZT62 677 aa21.48■■□□□ 1.03
CCDC88B-201ENST00000301897 SSH2Q76I76 1423 aa21.46■■□□□ 1.03
CCDC88B-201ENST00000301897 PDE3BQ13370 1112 aa21.46■■□□□ 1.03
CCDC88B-201ENST00000301897 R3HDM1Q15032 1099 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-201ENST00000301897 NUTM2GQ5VZR2 741 aa21.46■■□□□ 1.03
CCDC88B-201ENST00000301897 CPDO75976 1380 aa21.46■■□□□ 1.03
CCDC88B-201ENST00000301897 TRIM37O94972 964 aa21.45■■□□□ 1.02
CCDC88B-201ENST00000301897 ABTB2Q8N961 1025 aa21.45■■□□□ 1.02
CCDC88B-201ENST00000301897 CAMKK2Q96RR4 588 aa21.45■■□□□ 1.02
CCDC88B-201ENST00000301897 BRD4O60885 1362 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-201ENST00000301897 EZH2Q15910 746 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-201ENST00000301897 USP19O94966 1318 aa21.44■■□□□ 1.02
CCDC88B-201ENST00000301897 NRKQ7Z2Y5 1582 aa21.44■■□□□ 1.02
CCDC88B-201ENST00000301897 C11orf95C9JLR9 678 aaPredicted RBP21.43■■□□□ 1.02
CCDC88B-201ENST00000301897 NLRP13Q86W25 1043 aa21.43■■□□□ 1.02
CCDC88B-201ENST00000301897 TCP11L2Q8N4U5 519 aa21.43■■□□□ 1.02
CCDC88B-201ENST00000301897 USP35Q9P2H5 1018 aa21.43■■□□□ 1.02
CCDC88B-201ENST00000301897 THRAP3Q9Y2W1 955 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-201ENST00000301897 APBA3O96018 575 aa21.42■■□□□ 1.02
CCDC88B-201ENST00000301897 LMO7Q8WWI1 1683 aa21.41■■□□□ 1.02
CCDC88B-201ENST00000301897 CAMTA1Q9Y6Y1 1673 aa21.4■■□□□ 1.02
CCDC88B-201ENST00000301897 SRPK2P78362 688 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-201ENST00000301897 CENPJQ9HC77 1338 aaPredicted RBP21.39■■□□□ 1.01
CCDC88B-201ENST00000301897 GCP02774 474 aa21.39■■□□□ 1.01
CCDC88B-201ENST00000301897 LARP1Q6PKG0 1096 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-201ENST00000301897 PPIP5K1Q6PFW1 1433 aa21.38■■□□□ 1.01
CCDC88B-201ENST00000301897 NBPF14Q5TI25 921 aa21.37■■□□□ 1.01
CCDC88B-201ENST00000301897 RREB1Q92766 1687 aa21.37■■□□□ 1.01
CCDC88B-201ENST00000301897 NBPF1Q3BBV0 1214 aa21.36■■□□□ 1.01
CCDC88B-201ENST00000301897 PARP4Q9UKK3 1724 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-201ENST00000301897 COL5A2P05997 1499 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-201ENST00000301897 CRB1P82279 1406 aa21.33■■□□□ 1.01
CCDC88B-201ENST00000301897 NUP188Q5SRE5 1749 aa21.32■■□□□ 1
CCDC88B-201ENST00000301897 QRICH2Q9H0J4 1663 aa21.32■■□□□ 1
CCDC88B-201ENST00000301897 CABP2Q9NPB3 220 aa21.32■■□□□ 1
CCDC88B-201ENST00000301897 USP6P35125 1406 aa21.31■■□□□ 1
CCDC88B-201ENST00000301897 AATKQ6ZMQ8 1374 aa21.31■■□□□ 1
CCDC88B-201ENST00000301897 OVOS2A0A0G2JMS6 1433 aa21.3■■□□□ 1
CCDC88B-201ENST00000301897 OVOS2A0A0J9YW53 1432 aa21.3■■□□□ 1
CCDC88B-201ENST00000301897 OVOS2Q6IE36 1432 aa21.3■■□□□ 1
CCDC88B-201ENST00000301897 NLRP6P59044 892 aa21.3■■□□□ 1
CCDC88B-201ENST00000301897 SLIT3O75094 1523 aa21.29■■□□□ 1
CCDC88B-201ENST00000301897 CABP1Q9NZU7 370 aa21.28■■□□□ 1
CCDC88B-201ENST00000301897 EVC2Q86UK5 1308 aa21.28■■□□□ 1
CCDC88B-201ENST00000301897 RGPD3A6NKT7 1758 aaPredicted RBP21.27■■□□□ 1
CCDC88B-201ENST00000301897 RGPD4Q7Z3J3 1758 aa21.27■■□□□ 1
CCDC88B-201ENST00000301897 ZBTB7CA1YPR0 619 aa21.25■□□□□ 0.99
CCDC88B-201ENST00000301897 DDB1Q16531 1140 aa21.25■□□□□ 0.99
CCDC88B-201ENST00000301897 ZNF692Q9BU19 519 aaPredicted RBP21.25■□□□□ 0.99
CCDC88B-201ENST00000301897 CDCA7Q9BWT1 371 aaPredicted RBP21.25■□□□□ 0.99
CCDC88B-201ENST00000301897 SPON1Q9HCB6 807 aa21.25■□□□□ 0.99
CCDC88B-201ENST00000301897 PEAK1Q9H792 1746 aa21.24■□□□□ 0.99
CCDC88B-201ENST00000301897 PLSCR1O15162 318 aa21.24■□□□□ 0.99
CCDC88B-201ENST00000301897 TOM1L2Q6ZVM7 507 aa21.24■□□□□ 0.99
CCDC88B-201ENST00000301897 LRRC37A3O60309 1634 aa21.23■□□□□ 0.99
CCDC88B-201ENST00000301897 KCNH5Q8NCM2 988 aa21.23■□□□□ 0.99
CCDC88B-201ENST00000301897 PIK3C2AO00443 1686 aa21.23■□□□□ 0.99
CCDC88B-201ENST00000301897 SBF2Q86WG5 1849 aa21.22■□□□□ 0.99
CCDC88B-201ENST00000301897 TRPM1Q7Z4N2 1603 aa21.22■□□□□ 0.99
CCDC88B-201ENST00000301897 PPP1R1BQ9UD71 204 aaPredicted RBP21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms