RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CCDC9Q9Y3X0 531 aaKnown RBP11.88□□□□□ -0.51
COL6A3-201ENST00000295550 NGDNQ8NEJ9 315 aaKnown RBP11.87□□□□□ -0.51
COL6A3-201ENST00000295550 CT47A1Q5JQC4 288 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-201ENST00000295550 WDR63Q8IWG1 891 aa11.87□□□□□ -0.51
COL6A3-201ENST00000295550 C11orf95C9JLR9 678 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-201ENST00000295550 ERCC4Q92889 916 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-201ENST00000295550 NUCB2P80303 420 aa11.86□□□□□ -0.51
COL6A3-201ENST00000295550 NUP153P49790 1475 aaKnown RBP11.86□□□□□ -0.51
COL6A3-201ENST00000295550 SYNE3Q6ZMZ3 975 aa11.86□□□□□ -0.51
COL6A3-201ENST00000295550 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.86□□□□□ -0.517e-8■■■■■ 186.3
COL6A3-201ENST00000295550 CCDC47Q96A33 483 aaKnown RBP11.86□□□□□ -0.51
COL6A3-201ENST00000295550 CSB-PGBD3P0DP91 1061 aa11.86□□□□□ -0.51
COL6A3-201ENST00000295550 SCAF11Q99590 1463 aaKnown RBP11.86□□□□□ -0.51
COL6A3-201ENST00000295550 DUOX2Q9NRD8 1548 aa11.86□□□□□ -0.51
COL6A3-201ENST00000295550 RUFY2Q8WXA3 655 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 CPLX1O14810 134 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 FRAT2O75474 233 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-201ENST00000295550 MTHFSP49914 203 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 KIAA0754O94854 1291 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 AXDND1Q5T1B0 1012 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-201ENST00000295550 NUP160Q12769 1436 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 VPS37CA5D8V6 355 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-201ENST00000295550 CCDC73Q6ZRK6 1079 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 ZKSCAN1P17029 563 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-201ENST00000295550 MRE11P49959 708 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.85□□□□□ -0.51
COL6A3-201ENST00000295550 EPS15P42566 896 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 CCDC173Q0VFZ6 552 aa11.85□□□□□ -0.51
COL6A3-201ENST00000295550 G3V3G9 751 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 LRRFIP1Q32MZ4 808 aaKnown RBP11.84□□□□□ -0.51
COL6A3-201ENST00000295550 DCAF8Q5TAQ9 597 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 PDILTQ8N807 584 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 NSD3Q9BZ95 1437 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 CABP2Q9NPB3 220 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 BRPF3Q9ULD4 1205 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 CFAP70Q5T0N1 1121 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 ODF2Q5BJF6 829 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 CCP110O43303 1012 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 HMGN5P82970 282 aaKnown RBP11.84□□□□□ -0.51
COL6A3-201ENST00000295550 RPGRIP1LQ68CZ1 1315 aa11.84□□□□□ -0.51
COL6A3-201ENST00000295550 MSH5O43196 834 aa11.83□□□□□ -0.51
COL6A3-201ENST00000295550 ASXL1Q8IXJ9 1541 aa11.83□□□□□ -0.52
COL6A3-201ENST00000295550 HSP90AB2PQ58FF8 381 aa11.83□□□□□ -0.52
COL6A3-201ENST00000295550 ELL2O00472 640 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-201ENST00000295550 FOSBP53539 338 aa11.83□□□□□ -0.52
COL6A3-201ENST00000295550 LNPKQ9C0E8 428 aa11.83□□□□□ -0.52
COL6A3-201ENST00000295550 PDZRN3Q9UPQ7 1066 aa11.83□□□□□ -0.52
COL6A3-201ENST00000295550 OLFM4Q6UX06 510 aa11.82□□□□□ -0.52
COL6A3-201ENST00000295550 TTLL5Q6EMB2 1281 aa11.82□□□□□ -0.52
COL6A3-201ENST00000295550 CPLX2Q6PUV4 134 aaKnown RBP11.82□□□□□ -0.52
COL6A3-201ENST00000295550 TAF3Q5VWG9 929 aa11.82□□□□□ -0.52
COL6A3-201ENST00000295550 INCENPQ9NQS7 918 aa11.82□□□□□ -0.52
COL6A3-201ENST00000295550 SLFN5Q08AF3 891 aa11.82□□□□□ -0.52
COL6A3-201ENST00000295550 AFAP1Q8N556 730 aa11.82□□□□□ -0.52
COL6A3-201ENST00000295550 LRPPRCP42704 1394 aaKnown RBP11.82□□□□□ -0.52
COL6A3-201ENST00000295550 MVPQ14764 893 aaKnown RBP11.82□□□□□ -0.52
COL6A3-201ENST00000295550 GOLGA6L10A6NI86 522 aa11.82□□□□□ -0.52
COL6A3-201ENST00000295550 ZRSR2Q15696 482 aaKnown RBP11.82□□□□□ -0.52
COL6A3-201ENST00000295550 BCAR3O75815 825 aa11.81□□□□□ -0.52
COL6A3-201ENST00000295550 SYCP2Q9BX26 1530 aa11.81□□□□□ -0.52
COL6A3-201ENST00000295550 MAST1Q9Y2H9 1570 aa11.81□□□□□ -0.52
COL6A3-201ENST00000295550 GCC1Q96CN9 775 aa11.81□□□□□ -0.52
COL6A3-201ENST00000295550 ATAD2Q6PL18 1390 aa11.81□□□□□ -0.52
COL6A3-201ENST00000295550 RBM10P98175 930 aaKnown RBP11.81□□□□□ -0.52
COL6A3-201ENST00000295550 RABEP1Q15276 862 aa11.81□□□□□ -0.52
COL6A3-201ENST00000295550 MAPK8IP2Q13387 824 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-201ENST00000295550 PRAG1Q86YV5 1406 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 TEX14Q8IWB6 1497 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 SMC3Q9UQE7 1217 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 TRIM5Q9C035 493 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 DISP3Q9P2K9 1392 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 GOLGA6L7A0A1B0GV03 622 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 CNKSR2Q8WXI2 1034 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 RNF20Q5VTR2 975 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 SMC2O95347 1197 aa11.8□□□□□ -0.52
COL6A3-201ENST00000295550 GGNBP2Q9H3C7 697 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 GPRASP1Q5JY77 1395 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 TMEM132EQ6IEE7 984 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 CCDC43Q96MW1 224 aaKnown RBP11.79□□□□□ -0.52
COL6A3-201ENST00000295550 NFXL1Q6ZNB6 911 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 PARD3Q8TEW0 1356 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 DYDC1Q8WWB3 177 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 EIF4G3O43432 1585 aaKnown RBP11.79□□□□□ -0.52
COL6A3-201ENST00000295550 NSD2O96028 1365 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 STK11IPQ8N1F8 1099 aa11.79□□□□□ -0.52
COL6A3-201ENST00000295550 ADGRL1O94910 1474 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 TSPY26PQ9H489 355 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 RRP9O43818 475 aaKnown RBP11.78□□□□□ -0.52
COL6A3-201ENST00000295550 NOB1Q9ULX3 412 aaKnown RBP11.78□□□□□ -0.52
COL6A3-201ENST00000295550 AMOTL1Q8IY63 956 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 DEF6Q9H4E7 631 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 HMOX1P09601 288 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 SKIDA1Q1XH10 827 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 OFD1O75665 1012 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 C1orf141Q5JVX7 400 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 TRIM34Q9BYJ4 488 aa11.78□□□□□ -0.52
COL6A3-201ENST00000295550 ZNF608Q9ULD9 1512 aaPredicted RBP11.78□□□□□ -0.52
COL6A3-201ENST00000295550 TRAK2O60296 914 aa11.77□□□□□ -0.52
COL6A3-201ENST00000295550 ABCC11Q96J66 1382 aa11.77□□□□□ -0.52
COL6A3-201ENST00000295550 SAFBQ15424 915 aaKnown RBP eCLIP11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms