RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 CRYBG1Q9Y4K1 1723 aa11.48□□□□□ -0.57
PTPDC1-201ENST00000288976 ANP32CO43423 234 aa11.48□□□□□ -0.57
PTPDC1-201ENST00000288976 TMC1Q8TDI8 760 aa11.48□□□□□ -0.57
PTPDC1-201ENST00000288976 CENPBP07199 599 aaPredicted RBP11.47□□□□□ -0.57
PTPDC1-201ENST00000288976 AMER1Q5JTC6 1135 aaPredicted RBP11.47□□□□□ -0.57
PTPDC1-201ENST00000288976 PXDNQ92626 1479 aa11.47□□□□□ -0.57
PTPDC1-201ENST00000288976 USP31Q70CQ4 1352 aa11.47□□□□□ -0.57
PTPDC1-201ENST00000288976 CARD14Q9BXL6 1004 aa11.47□□□□□ -0.57
PTPDC1-201ENST00000288976 ROBO1Q9Y6N7 1651 aa11.46□□□□□ -0.57
PTPDC1-201ENST00000288976 ACEP12821 1306 aa11.46□□□□□ -0.57
PTPDC1-201ENST00000288976 PHRF1Q9P1Y6 1649 aaKnown RBP11.46□□□□□ -0.57
PTPDC1-201ENST00000288976 CCER2I3L3R5 266 aa11.46□□□□□ -0.57
PTPDC1-201ENST00000288976 SBNO1A3KN83 1393 aa11.46□□□□□ -0.58
PTPDC1-201ENST00000288976 OVOS2A0A0J9YW53 1432 aa11.46□□□□□ -0.58
PTPDC1-201ENST00000288976 OVOS2Q6IE36 1432 aa11.46□□□□□ -0.58
PTPDC1-201ENST00000288976 SMG6Q86US8 1419 aaKnown RBP11.46□□□□□ -0.58
PTPDC1-201ENST00000288976 PHF8Q9UPP1 1060 aa11.46□□□□□ -0.58
PTPDC1-201ENST00000288976 SLIT3O75094 1523 aa11.45□□□□□ -0.58
PTPDC1-201ENST00000288976 PRKRIP1Q9H875 184 aaPredicted RBP11.45□□□□□ -0.58
PTPDC1-201ENST00000288976 COL22A1Q8NFW1 1626 aaPredicted RBP11.45□□□□□ -0.58
PTPDC1-201ENST00000288976 ABCC6O95255 1503 aa11.44□□□□□ -0.58
PTPDC1-201ENST00000288976 MYBBP1AQ9BQG0 1328 aaKnown RBP11.44□□□□□ -0.58
PTPDC1-201ENST00000288976 ABCA3Q99758 1704 aa11.43□□□□□ -0.58
PTPDC1-201ENST00000288976 AATKQ6ZMQ8 1374 aa11.43□□□□□ -0.58
PTPDC1-201ENST00000288976 TTC21BQ7Z4L5 1316 aa11.42□□□□□ -0.58
PTPDC1-201ENST00000288976 ESCO1Q5FWF5 840 aa11.42□□□□□ -0.58
PTPDC1-201ENST00000288976 NPHP3Q7Z494 1330 aa11.41□□□□□ -0.58
PTPDC1-201ENST00000288976 TNS3Q68CZ2 1445 aa11.41□□□□□ -0.58
PTPDC1-201ENST00000288976 NGDNQ8NEJ9 315 aaKnown RBP11.41□□□□□ -0.58
PTPDC1-201ENST00000288976 INSRP06213 1382 aa11.41□□□□□ -0.58
PTPDC1-201ENST00000288976 PSME1Q06323 249 aa11.41□□□□□ -0.58
PTPDC1-201ENST00000288976 SLAIN2Q9P270 581 aa11.4□□□□□ -0.58
PTPDC1-201ENST00000288976 PHLPP1O60346 1717 aa11.4□□□□□ -0.58
PTPDC1-201ENST00000288976 RBM33Q96EV2 1170 aaKnown RBP11.4□□□□□ -0.58
PTPDC1-201ENST00000288976 COL16A1Q07092 1604 aaPredicted RBP11.4□□□□□ -0.58
PTPDC1-201ENST00000288976 NFAT5O94916 1531 aa11.4□□□□□ -0.58
PTPDC1-201ENST00000288976 KIF24Q5T7B8 1368 aa11.4□□□□□ -0.59
PTPDC1-201ENST00000288976 FYB1O15117 783 aa11.39□□□□□ -0.59
PTPDC1-201ENST00000288976 BRINP3Q76B58 766 aa11.39□□□□□ -0.59
PTPDC1-201ENST00000288976 ARHGEF10O15013 1369 aa11.39□□□□□ -0.59
PTPDC1-201ENST00000288976 CDK12Q9NYV4 1490 aaPredicted RBP11.39□□□□□ -0.59
PTPDC1-201ENST00000288976 SHPRHQ149N8 1683 aa11.39□□□□□ -0.59
PTPDC1-201ENST00000288976 SOS2Q07890 1332 aaPredicted RBP11.38□□□□□ -0.59
PTPDC1-201ENST00000288976 ORAI2Q96SN7 254 aa11.38□□□□□ -0.59
PTPDC1-201ENST00000288976 USP19O94966 1318 aa11.38□□□□□ -0.59
PTPDC1-201ENST00000288976 LTN1O94822 1766 aa11.38□□□□□ -0.59
PTPDC1-201ENST00000288976 NLRP13Q86W25 1043 aa11.37□□□□□ -0.59
PTPDC1-201ENST00000288976 MIER1Q8N108 512 aa11.37□□□□□ -0.59
PTPDC1-201ENST00000288976 PMFBP1Q8TBY8 1022 aa11.37□□□□□ -0.59
PTPDC1-201ENST00000288976 RTL1A6NKG5 1358 aa11.37□□□□□ -0.59
PTPDC1-201ENST00000288976 COL3A1P02461 1466 aaPredicted RBP11.37□□□□□ -0.59
PTPDC1-201ENST00000288976 NUTM2FA1L443 756 aa11.37□□□□□ -0.59
PTPDC1-201ENST00000288976 MORC1Q86VD1 984 aa11.37□□□□□ -0.59
PTPDC1-201ENST00000288976 MAP2P11137 1827 aaKnown RBP11.36□□□□□ -0.59
PTPDC1-201ENST00000288976 CC2D1BQ5T0F9 858 aaKnown RBP11.36□□□□□ -0.59
PTPDC1-201ENST00000288976 COG3Q96JB2 828 aa11.36□□□□□ -0.59
PTPDC1-201ENST00000288976 FAM208AQ9UK61 1670 aaKnown RBP11.36□□□□□ -0.59
PTPDC1-201ENST00000288976 PEAK1Q9H792 1746 aa11.36□□□□□ -0.59
PTPDC1-201ENST00000288976 TOM1O60784 492 aa11.36□□□□□ -0.59
PTPDC1-201ENST00000288976 PPP2R1AP30153 589 aa11.36□□□□□ -0.59
PTPDC1-201ENST00000288976 CERKQ8TCT0 537 aa11.35□□□□□ -0.59
PTPDC1-201ENST00000288976 KRT28Q7Z3Y7 464 aa11.35□□□□□ -0.59
PTPDC1-201ENST00000288976 PNPLA6Q8IY17 1366 aa11.35□□□□□ -0.59
PTPDC1-201ENST00000288976 CAMTA1Q9Y6Y1 1673 aa11.35□□□□□ -0.59
PTPDC1-201ENST00000288976 ZBTB7CA1YPR0 619 aa11.35□□□□□ -0.59
PTPDC1-201ENST00000288976 RGPD1P0DJD0 1748 aa11.34□□□□□ -0.59
PTPDC1-201ENST00000288976 SPATA31A3Q5VYP0 1347 aa11.34□□□□□ -0.59
PTPDC1-201ENST00000288976 NME9Q86XW9 330 aa11.34□□□□□ -0.59
PTPDC1-201ENST00000288976 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.33□□□□□ -0.6
PTPDC1-201ENST00000288976 DAXXQ9UER7 740 aaPredicted RBP11.33□□□□□ -0.6
PTPDC1-201ENST00000288976 KCNH5Q8NCM2 988 aa11.32□□□□□ -0.6
PTPDC1-201ENST00000288976 GGNBP2Q9H3C7 697 aa11.32□□□□□ -0.6
PTPDC1-201ENST00000288976 COL18A1P39060 1754 aa11.32□□□□□ -0.6
PTPDC1-201ENST00000288976 LMO7Q8WWI1 1683 aa11.31□□□□□ -0.6
PTPDC1-201ENST00000288976 FOXO3O43524 673 aa11.31□□□□□ -0.6
PTPDC1-201ENST00000288976 CPDO75976 1380 aa11.31□□□□□ -0.6
PTPDC1-201ENST00000288976 ABTB2Q8N961 1025 aa11.3□□□□□ -0.6
PTPDC1-201ENST00000288976 COL14A1Q05707 1796 aaKnown RBP11.3□□□□□ -0.6
PTPDC1-201ENST00000288976 BLMP54132 1417 aaPredicted RBP11.3□□□□□ -0.6
PTPDC1-201ENST00000288976 CFAP53Q96M91 514 aa11.29□□□□□ -0.6
PTPDC1-201ENST00000288976 FLT4P35916 1363 aa11.29□□□□□ -0.6
PTPDC1-201ENST00000288976 PLEKHG2Q9H7P9 1386 aa11.29□□□□□ -0.6
PTPDC1-201ENST00000288976 NLRP6P59044 892 aa11.28□□□□□ -0.6
PTPDC1-201ENST00000288976 NEFMP07197 916 aa11.28□□□□□ -0.6
PTPDC1-201ENST00000288976 PAK3O75914 559 aaPredicted RBP11.28□□□□□ -0.6
PTPDC1-201ENST00000288976 LRRC59Q96AG4 307 aaKnown RBP11.28□□□□□ -0.6
PTPDC1-201ENST00000288976 MRS2Q9HD23 443 aa11.27□□□□□ -0.6
PTPDC1-201ENST00000288976 HAP1P54257 671 aaPredicted RBP11.27□□□□□ -0.61
PTPDC1-201ENST00000288976 POLKQ9UBT6 870 aa11.27□□□□□ -0.61
PTPDC1-201ENST00000288976 NWD2Q9ULI1 1742 aa11.27□□□□□ -0.61
PTPDC1-201ENST00000288976 ZRANB1Q9UGI0 708 aa11.26□□□□□ -0.61
PTPDC1-201ENST00000288976 PLCH1Q4KWH8 1693 aa11.26□□□□□ -0.61
PTPDC1-201ENST00000288976 NCAPD2Q15021 1401 aa11.26□□□□□ -0.61
PTPDC1-201ENST00000288976 UBAP1LF5GYI3 381 aa11.26□□□□□ -0.61
PTPDC1-201ENST00000288976 MYT1Q01538 1121 aa11.26□□□□□ -0.61
PTPDC1-201ENST00000288976 PNISRQ8TF01 805 aaKnown RBP11.26□□□□□ -0.61
PTPDC1-201ENST00000288976 MTHFSP49914 203 aa11.25□□□□□ -0.61
PTPDC1-201ENST00000288976 LMOD2Q6P5Q4 547 aa11.25□□□□□ -0.61
PTPDC1-201ENST00000288976 NRAPQ86VF7 1730 aa11.25□□□□□ -0.61
PTPDC1-201ENST00000288976 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms