RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 A0A0G2JS52 829 aa18.53■□□□□ 0.56
CD44-203ENST00000278386 MYT1Q01538 1121 aa18.53■□□□□ 0.56
CD44-203ENST00000278386 SEPT12Q8IYM1 358 aa18.52■□□□□ 0.56
CD44-203ENST00000278386 FAM83GA6ND36 823 aa18.51■□□□□ 0.55
CD44-203ENST00000278386 CCDC125Q86Z20 511 aa18.51■□□□□ 0.55
CD44-203ENST00000278386 NUDT16Q96DE0 195 aaKnown RBP18.51■□□□□ 0.55
CD44-203ENST00000278386 BLMP54132 1417 aaPredicted RBP18.5■□□□□ 0.55
CD44-203ENST00000278386 BTG4Q9NY30 223 aa18.5■□□□□ 0.55
CD44-203ENST00000278386 CDK19Q9BWU1 502 aa18.48■□□□□ 0.55
CD44-203ENST00000278386 ZRANB1Q9UGI0 708 aa18.47■□□□□ 0.55
CD44-203ENST00000278386 NRKQ7Z2Y5 1582 aa18.47■□□□□ 0.55
CD44-203ENST00000278386 SF3B2Q13435 895 aaKnown RBP18.46■□□□□ 0.55
CD44-203ENST00000278386 PRDM11Q9NQV5 511 aa18.46■□□□□ 0.55
CD44-203ENST00000278386 RGPD1P0DJD0 1748 aa18.46■□□□□ 0.55
CD44-203ENST00000278386 TRPM1Q7Z4N2 1603 aa18.45■□□□□ 0.54
CD44-203ENST00000278386 THSD7AQ9UPZ6 1657 aa18.45■□□□□ 0.54
CD44-203ENST00000278386 FAM98CQ17RN3 349 aaKnown RBP18.45■□□□□ 0.54
CD44-203ENST00000278386 NBPF1Q3BBV0 1214 aa18.45■□□□□ 0.54
CD44-203ENST00000278386 KRT27Q7Z3Y8 459 aa18.45■□□□□ 0.54
CD44-203ENST00000278386 POLR3AO14802 1390 aaPredicted RBP18.44■□□□□ 0.54
CD44-203ENST00000278386 ACEP12821 1306 aa18.44■□□□□ 0.54
CD44-203ENST00000278386 KIAA0232Q92628 1395 aa18.43■□□□□ 0.54
CD44-203ENST00000278386 NUTM2GQ5VZR2 741 aa18.43■□□□□ 0.54
CD44-203ENST00000278386 CENPJQ9HC77 1338 aaPredicted RBP18.43■□□□□ 0.54
CD44-203ENST00000278386 PPIP5K1Q6PFW1 1433 aa18.42■□□□□ 0.54
CD44-203ENST00000278386 ONECUT3O60422 494 aaPredicted RBP18.42■□□□□ 0.54
CD44-203ENST00000278386 SRPK2P78362 688 aaKnown RBP18.42■□□□□ 0.54
CD44-203ENST00000278386 CCDC61Q9Y6R9 512 aa18.42■□□□□ 0.54
CD44-203ENST00000278386 DEFB132Q7Z7B7 95 aa18.41■□□□□ 0.54
CD44-203ENST00000278386 CHRNA2Q15822 529 aa18.4■□□□□ 0.54
CD44-203ENST00000278386 SPATA31A5Q5VU36 1347 aa18.4■□□□□ 0.54
CD44-203ENST00000278386 SPATA31A7Q8IWB4 1347 aa18.4■□□□□ 0.54
CD44-203ENST00000278386 ZC3H6P61129 1189 aaKnown RBP18.39■□□□□ 0.53
CD44-203ENST00000278386 NBPF8Q3BBV2 869 aa18.39■□□□□ 0.53
CD44-203ENST00000278386 STRN4Q9NRL3 753 aa18.39■□□□□ 0.53
CD44-203ENST00000278386 TNS1Q9HBL0 1735 aaKnown RBP18.39■□□□□ 0.53
CD44-203ENST00000278386 LMO7Q8WWI1 1683 aa18.38■□□□□ 0.53
CD44-203ENST00000278386 PLEKHG3A1L390 1219 aa18.37■□□□□ 0.53
CD44-203ENST00000278386 ABTB2Q8N961 1025 aa18.37■□□□□ 0.53
CD44-203ENST00000278386 CABP2Q9NPB3 220 aa18.37■□□□□ 0.53
CD44-203ENST00000278386 L3MBTL2Q969R5 705 aa18.36■□□□□ 0.53
CD44-203ENST00000278386 SSH2Q76I76 1423 aa18.35■□□□□ 0.53
CD44-203ENST00000278386 BAG6P46379 1132 aa18.35■□□□□ 0.53
CD44-203ENST00000278386 SRCAPQ6ZRS2 3230 aa18.35■□□□□ 0.53
CD44-203ENST00000278386 ROCK2O75116 1388 aaKnown RBP18.34■□□□□ 0.53
CD44-203ENST00000278386 USP19O94966 1318 aa18.34■□□□□ 0.53
CD44-203ENST00000278386 SPATA31A1Q5TZJ5 1347 aa18.34■□□□□ 0.53
CD44-203ENST00000278386 FAM182BQ5T319 152 aa18.34■□□□□ 0.53
CD44-203ENST00000278386 SIN3AQ96ST3 1273 aa18.34■□□□□ 0.53
CD44-203ENST00000278386 AKAP12Q02952 1782 aa18.34■□□□□ 0.53
CD44-203ENST00000278386 PIK3C2AO00443 1686 aa18.34■□□□□ 0.53
CD44-203ENST00000278386 NEUROD1Q13562 356 aa18.33■□□□□ 0.52
CD44-203ENST00000278386 CAMTA1Q9Y6Y1 1673 aa18.33■□□□□ 0.52
CD44-203ENST00000278386 USP6P35125 1406 aa18.32■□□□□ 0.52
CD44-203ENST00000278386 EVA1CP58658 441 aa18.32■□□□□ 0.52
CD44-203ENST00000278386 USP35Q9P2H5 1018 aa18.32■□□□□ 0.52
CD44-203ENST00000278386 CPDO75976 1380 aa18.31■□□□□ 0.52
CD44-203ENST00000278386 NLRP13Q86W25 1043 aa18.31■□□□□ 0.52
CD44-203ENST00000278386 BRD4O60885 1362 aaPredicted RBP18.3■□□□□ 0.52
CD44-203ENST00000278386 EVC2Q86UK5 1308 aa18.3■□□□□ 0.52
CD44-203ENST00000278386 ZBTB7CA1YPR0 619 aa18.3■□□□□ 0.52
CD44-203ENST00000278386 LRP5O75197 1615 aa18.3■□□□□ 0.52
CD44-203ENST00000278386 PARP4Q9UKK3 1724 aaKnown RBP18.29■□□□□ 0.52
CD44-203ENST00000278386 SLIT3O75094 1523 aa18.29■□□□□ 0.52
CD44-203ENST00000278386 WNK3Q9BYP7 1800 aa18.29■□□□□ 0.52
CD44-203ENST00000278386 CABP1Q9NZU7 370 aa18.29■□□□□ 0.52
CD44-203ENST00000278386 COL5A2P05997 1499 aaPredicted RBP18.28■□□□□ 0.52
CD44-203ENST00000278386 GCP02774 474 aa18.27■□□□□ 0.52
CD44-203ENST00000278386 LARP1Q6PKG0 1096 aaKnown RBP18.27■□□□□ 0.52
CD44-203ENST00000278386 MON2Q7Z3U7 1717 aa18.26■□□□□ 0.51
CD44-203ENST00000278386 DISP2A7MBM2 1401 aa18.26■□□□□ 0.51
CD44-203ENST00000278386 NLRP6P59044 892 aa18.26■□□□□ 0.51
CD44-203ENST00000278386 EN1Q05925 392 aaPredicted RBP18.26■□□□□ 0.51
CD44-203ENST00000278386 RGPD5Q99666 1765 aa18.26■□□□□ 0.51
CD44-203ENST00000278386 PSDA5PKW4 1024 aaPredicted RBP18.25■□□□□ 0.51
CD44-203ENST00000278386 RREB1Q92766 1687 aa18.25■□□□□ 0.51
CD44-203ENST00000278386 LRRC37A3O60309 1634 aa18.24■□□□□ 0.51
CD44-203ENST00000278386 PDE3BQ13370 1112 aa18.24■□□□□ 0.51
CD44-203ENST00000278386 BARGINQ6ZT62 677 aa18.24■□□□□ 0.51
CD44-203ENST00000278386 TCP11L2Q8N4U5 519 aa18.24■□□□□ 0.51
CD44-203ENST00000278386 COL18A1P39060 1754 aa18.24■□□□□ 0.51
CD44-203ENST00000278386 CRB1P82279 1406 aa18.23■□□□□ 0.51
CD44-203ENST00000278386 TRIM37O94972 964 aa18.23■□□□□ 0.51
CD44-203ENST00000278386 FAM196AQ6ZSG2 479 aa18.23■□□□□ 0.51
CD44-203ENST00000278386 NUP188Q5SRE5 1749 aa18.22■□□□□ 0.51
CD44-203ENST00000278386 THRAP3Q9Y2W1 955 aaKnown RBP18.21■□□□□ 0.51
CD44-203ENST00000278386 EZH2Q15910 746 aaKnown RBP18.2■□□□□ 0.5
CD44-203ENST00000278386 SBF2Q86WG5 1849 aa18.2■□□□□ 0.5
CD44-203ENST00000278386 CPSF1Q10570 1443 aaKnown RBP18.2■□□□□ 0.5
CD44-203ENST00000278386 AATKQ6ZMQ8 1374 aa18.19■□□□□ 0.5
CD44-203ENST00000278386 SOX12O15370 315 aa18.19■□□□□ 0.5
CD44-203ENST00000278386 TTC21BQ7Z4L5 1316 aa18.19■□□□□ 0.5
CD44-203ENST00000278386 KTN1Q86UP2 1357 aaKnown RBP18.18■□□□□ 0.5
CD44-203ENST00000278386 TONSLQ96HA7 1378 aa18.18■□□□□ 0.5
CD44-203ENST00000278386 LTN1O94822 1766 aa18.18■□□□□ 0.5
CD44-203ENST00000278386 APBA3O96018 575 aa18.18■□□□□ 0.5
CD44-203ENST00000278386 PEAK1Q9H792 1746 aa18.18■□□□□ 0.5
CD44-203ENST00000278386 R3HDM1Q15032 1099 aaKnown RBP18.17■□□□□ 0.5
CD44-203ENST00000278386 ZNF692Q9BU19 519 aaPredicted RBP18.17■□□□□ 0.5
CD44-203ENST00000278386 CARD11Q9BXL7 1154 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms