RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 USP47Q96K76 1375 aa34.19■■■■□ 3.06
SSBP4-201ENST00000270061 PLEKHG5O94827 1062 aa34.18■■■■□ 3.06
SSBP4-201ENST00000270061 CABLES1Q8TDN4 633 aa34.18■■■■□ 3.06
SSBP4-201ENST00000270061 POLR3AO14802 1390 aaPredicted RBP34.18■■■■□ 3.06
SSBP4-201ENST00000270061 EVC2Q86UK5 1308 aa34.18■■■■□ 3.06
SSBP4-201ENST00000270061 PLEKHG3A1L390 1219 aa34.18■■■■□ 3.06
SSBP4-201ENST00000270061 PAK3O75914 559 aaPredicted RBP34.18■■■■□ 3.06
SSBP4-201ENST00000270061 ACEP12821 1306 aa34.17■■■■□ 3.06
SSBP4-201ENST00000270061 DDX10Q13206 875 aaKnown RBP34.16■■■■□ 3.06
SSBP4-201ENST00000270061 PPIP5K1Q6PFW1 1433 aa34.16■■■■□ 3.06
SSBP4-201ENST00000270061 RBM6P78332 1123 aaKnown RBP34.11■■■■□ 3.05
SSBP4-201ENST00000270061 TRPC5Q9UL62 973 aaPredicted RBP34.11■■■■□ 3.05
SSBP4-201ENST00000270061 WASHC2AQ641Q2 1341 aa34.1■■■■□ 3.05
SSBP4-201ENST00000270061 CDK12Q9NYV4 1490 aaPredicted RBP34.09■■■■□ 3.05
SSBP4-201ENST00000270061 BCL9LQ86UU0 1499 aa34.09■■■■□ 3.05
SSBP4-201ENST00000270061 SBNO2Q9Y2G9 1366 aa34.08■■■■□ 3.05
SSBP4-201ENST00000270061 TNKS1BP1Q9C0C2 1729 aaKnown RBP34.08■■■■□ 3.05
SSBP4-201ENST00000270061 CRYBG1Q9Y4K1 1723 aa34.07■■■■□ 3.05
SSBP4-201ENST00000270061 CABP1Q9NZU7 370 aa34.07■■■■□ 3.04
SSBP4-201ENST00000270061 SLIT2O94813 1529 aa34.06■■■■□ 3.04
SSBP4-201ENST00000270061 ATRNO75882 1429 aa34.05■■■■□ 3.04
SSBP4-201ENST00000270061 CCDC7Q96M83 1385 aa34.05■■■■□ 3.04
SSBP4-201ENST00000270061 PLCH1Q4KWH8 1693 aa34.04■■■■□ 3.04
SSBP4-201ENST00000270061 NWD2Q9ULI1 1742 aa34.03■■■■□ 3.04
SSBP4-201ENST00000270061 C11orf95C9JLR9 678 aaPredicted RBP34.03■■■■□ 3.04
SSBP4-201ENST00000270061 UNC5CLQ8IV45 518 aa34.01■■■■□ 3.04
SSBP4-201ENST00000270061 ATAD2Q6PL18 1390 aa34■■■■□ 3.03
SSBP4-201ENST00000270061 RGS12O14924 1447 aa33.99■■■■□ 3.03
SSBP4-201ENST00000270061 PHRF1Q9P1Y6 1649 aaKnown RBP33.98■■■■□ 3.03
SSBP4-201ENST00000270061 ABTB2Q8N961 1025 aa33.98■■■■□ 3.03
SSBP4-201ENST00000270061 BRD4O60885 1362 aaPredicted RBP33.98■■■■□ 3.03
SSBP4-201ENST00000270061 NUTM2GQ5VZR2 741 aa33.98■■■■□ 3.03
SSBP4-201ENST00000270061 FAM83GA6ND36 823 aa33.97■■■■□ 3.03
SSBP4-201ENST00000270061 USP6P35125 1406 aa33.97■■■■□ 3.03
SSBP4-201ENST00000270061 AKAP12Q02952 1782 aa33.96■■■■□ 3.03
SSBP4-201ENST00000270061 COL14A1Q05707 1796 aaKnown RBP33.96■■■■□ 3.03
SSBP4-201ENST00000270061 KIF7Q2M1P5 1343 aa33.95■■■■□ 3.03
SSBP4-201ENST00000270061 ST20-MTHFSA0A0A6YYL1 179 aa33.94■■■■□ 3.02
SSBP4-201ENST00000270061 GJD4Q96KN9 370 aaPredicted RBP33.94■■■■□ 3.02
SSBP4-201ENST00000270061 ZNF692Q9BU19 519 aaPredicted RBP33.9■■■■□ 3.02
SSBP4-201ENST00000270061 PRDM11Q9NQV5 511 aa33.89■■■■□ 3.02
SSBP4-201ENST00000270061 NRAPQ86VF7 1730 aa33.89■■■■□ 3.02
SSBP4-201ENST00000270061 NLRP13Q86W25 1043 aa33.88■■■■□ 3.01
SSBP4-201ENST00000270061 BTG4Q9NY30 223 aa33.88■■■■□ 3.01
SSBP4-201ENST00000270061 GLI3P10071 1580 aa33.87■■■■□ 3.01
SSBP4-201ENST00000270061 TESK2Q96S53 571 aa33.87■■■■□ 3.01
SSBP4-201ENST00000270061 SSH2Q76I76 1423 aa33.86■■■■□ 3.01
SSBP4-201ENST00000270061 KIAA0232Q92628 1395 aa33.86■■■■□ 3.01
SSBP4-201ENST00000270061 VPS72Q15906 364 aa33.86■■■■□ 3.01
SSBP4-201ENST00000270061 NRKQ7Z2Y5 1582 aa33.86■■■■□ 3.01
SSBP4-201ENST00000270061 USP19O94966 1318 aa33.86■■■■□ 3.01
SSBP4-201ENST00000270061 SLC24A1O60721 1099 aa33.85■■■■□ 3.01
SSBP4-201ENST00000270061 CPSF1Q10570 1443 aaKnown RBP33.85■■■■□ 3.01
SSBP4-201ENST00000270061 MON2Q7Z3U7 1717 aa33.84■■■■□ 3.01
SSBP4-201ENST00000270061 PIK3C2AO00443 1686 aa33.84■■■■□ 3.01
SSBP4-201ENST00000270061 ZC3H6P61129 1189 aaKnown RBP33.84■■■■□ 3.01
SSBP4-201ENST00000270061 CCDC9Q9Y3X0 531 aaKnown RBP33.84■■■■□ 3.01
SSBP4-201ENST00000270061 TMC1Q8TDI8 760 aa33.83■■■■□ 3.01
SSBP4-201ENST00000270061 PUS7Q96PZ0 661 aaKnown RBP33.83■■■■□ 3.01
SSBP4-201ENST00000270061 KTN1Q86UP2 1357 aaKnown RBP33.82■■■■□ 3.01
SSBP4-201ENST00000270061 NLRP6P59044 892 aa33.82■■■■□ 3
SSBP4-201ENST00000270061 ANP32CO43423 234 aa33.8■■■■□ 3
SSBP4-201ENST00000270061 TTC21BQ7Z4L5 1316 aa33.8■■■■□ 3
SSBP4-201ENST00000270061 EP400Q96L91 3159 aa33.79■■■■□ 3
SSBP4-201ENST00000270061 GCP02774 474 aa33.79■■■■□ 3
SSBP4-201ENST00000270061 CHRNA2Q15822 529 aa33.79■■■■□ 3
SSBP4-201ENST00000270061 UPF1Q92900 1129 aaKnown RBP eCLIP33.77■■■■□ 3
SSBP4-201ENST00000270061 TTC21AQ8NDW8 1320 aa33.77■■■■□ 3
SSBP4-201ENST00000270061 SLC12A5Q9H2X9 1139 aa33.77■■■■□ 3
SSBP4-201ENST00000270061 CPDO75976 1380 aa33.76■■■■□ 3
SSBP4-201ENST00000270061 CD163L1Q9NR16 1453 aa33.76■■■□□ 2.99
SSBP4-201ENST00000270061 SLIT3O75094 1523 aa33.75■■■□□ 2.99
SSBP4-201ENST00000270061 HDGFL2Q7Z4V5 671 aaPredicted RBP33.74■■■□□ 2.99
SSBP4-201ENST00000270061 BRWD3Q6RI45 1802 aa33.73■■■□□ 2.99
SSBP4-201ENST00000270061 TMF1P82094 1093 aa33.72■■■□□ 2.99
SSBP4-201ENST00000270061 TERF2IPQ9NYB0 399 aa33.72■■■□□ 2.99
SSBP4-201ENST00000270061 NINLQ9Y2I6 1382 aa33.71■■■□□ 2.99
SSBP4-201ENST00000270061 LMO7Q8WWI1 1683 aa33.7■■■□□ 2.98
SSBP4-201ENST00000270061 CCER2I3L3R5 266 aa33.69■■■□□ 2.98
SSBP4-201ENST00000270061 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.69■■■□□ 2.98
SSBP4-201ENST00000270061 ONECUT3O60422 494 aaPredicted RBP33.68■■■□□ 2.98
SSBP4-201ENST00000270061 SEPT12Q8IYM1 358 aa33.68■■■□□ 2.98
SSBP4-201ENST00000270061 STRN4Q9NRL3 753 aa33.68■■■□□ 2.98
SSBP4-201ENST00000270061 A0A1W2PP64 1363 aa33.68■■■□□ 2.98
SSBP4-201ENST00000270061 SPATA31A5Q5VU36 1347 aa33.68■■■□□ 2.98
SSBP4-201ENST00000270061 SPATA31A7Q8IWB4 1347 aa33.68■■■□□ 2.98
SSBP4-201ENST00000270061 CAMTA1Q9Y6Y1 1673 aa33.67■■■□□ 2.98
SSBP4-201ENST00000270061 EDC4Q6P2E9 1401 aaKnown RBP33.66■■■□□ 2.98
SSBP4-201ENST00000270061 EVA1CP58658 441 aa33.65■■■□□ 2.98
SSBP4-201ENST00000270061 FAM98CQ17RN3 349 aaKnown RBP33.65■■■□□ 2.98
SSBP4-201ENST00000270061 KCNH5Q8NCM2 988 aa33.65■■■□□ 2.98
SSBP4-201ENST00000270061 ZBTB7CA1YPR0 619 aa33.64■■■□□ 2.98
SSBP4-201ENST00000270061 A0A0G2JS52 829 aa33.63■■■□□ 2.97
SSBP4-201ENST00000270061 MYT1Q01538 1121 aa33.63■■■□□ 2.97
SSBP4-201ENST00000270061 USP54Q70EL1 1684 aa33.63■■■□□ 2.97
SSBP4-201ENST00000270061 CDCA8Q53HL2 280 aa33.62■■■□□ 2.97
SSBP4-201ENST00000270061 SPATA31A1Q5TZJ5 1347 aa33.61■■■□□ 2.97
SSBP4-201ENST00000270061 POLR3GLQ9BT43 218 aa33.6■■■□□ 2.97
SSBP4-201ENST00000270061 AATKQ6ZMQ8 1374 aa33.6■■■□□ 2.97
SSBP4-201ENST00000270061 USP31Q70CQ4 1352 aa33.6■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms