RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CEP63Q96MT8 703 aa13.53□□□□□ -0.24
PTPN4-201ENST00000263708 TTC39AQ5SRH9 613 aa13.53□□□□□ -0.24
PTPN4-201ENST00000263708 TMEM87AQ8NBN3 555 aa13.52□□□□□ -0.24
PTPN4-201ENST00000263708 GRIPAP1Q4V328 841 aa13.52□□□□□ -0.24
PTPN4-201ENST00000263708 TAF3Q5VWG9 929 aa13.52□□□□□ -0.25
PTPN4-201ENST00000263708 LRRFIP2Q9Y608 721 aaKnown RBP13.52□□□□□ -0.25
PTPN4-201ENST00000263708 ERC1Q8IUD2 1116 aa13.52□□□□□ -0.25
PTPN4-201ENST00000263708 MYBBP1AQ9BQG0 1328 aaKnown RBP13.52□□□□□ -0.25
PTPN4-201ENST00000263708 PIP4K2AP48426 406 aaPredicted RBP13.51□□□□□ -0.25
PTPN4-201ENST00000263708 MYCNP04198 464 aaPredicted RBP13.51□□□□□ -0.25
PTPN4-201ENST00000263708 NUTM2GQ5VZR2 741 aa13.51□□□□□ -0.25
PTPN4-201ENST00000263708 UBTFL1P0CB47 393 aaPredicted RBP13.51□□□□□ -0.25
PTPN4-201ENST00000263708 TXLNBQ8N3L3 684 aa13.51□□□□□ -0.25
PTPN4-201ENST00000263708 LETM1O95202 739 aaPredicted RBP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 STAMBPO95630 424 aa13.5□□□□□ -0.25
PTPN4-201ENST00000263708 DZIP1LQ8IYY4 767 aaKnown RBP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 CNNM1Q9NRU3 951 aa13.5□□□□□ -0.25
PTPN4-201ENST00000263708 ZNF396Q96N95 335 aaPredicted RBP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 LNPKQ9C0E8 428 aa13.5□□□□□ -0.25
PTPN4-201ENST00000263708 SSBP05455 408 aaKnown RBP eCLIP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 UACAQ9BZF9 1416 aa13.5□□□□□ -0.25
PTPN4-201ENST00000263708 NLRP2Q9NX02 1062 aa13.5□□□□□ -0.25
PTPN4-201ENST00000263708 PUS7Q96PZ0 661 aaKnown RBP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 API5Q9BZZ5 524 aaKnown RBP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 GNL3LQ9NVN8 582 aaKnown RBP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 DIAPH1O60610 1272 aaKnown RBP13.5□□□□□ -0.25
PTPN4-201ENST00000263708 KIF7Q2M1P5 1343 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 ZNF76P36508 570 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 TSHZ2Q9NRE2 1034 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 PRDM2Q13029 1718 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 TNIKQ9UKE5 1360 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 EXOC6Q8TAG9 804 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 RRP1P56182 461 aaKnown RBP13.49□□□□□ -0.25
PTPN4-201ENST00000263708 GIMAP7Q8NHV1 300 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 HMOX1P09601 288 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 STK38Q15208 465 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 SLC26A8Q96RN1 970 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 CUX2O14529 1486 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 TSPY26PQ9H489 355 aa13.49□□□□□ -0.25
PTPN4-201ENST00000263708 SCLT1Q96NL6 688 aa13.48□□□□□ -0.25
PTPN4-201ENST00000263708 RBM42Q9BTD8 480 aaKnown RBP13.48□□□□□ -0.25
PTPN4-201ENST00000263708 CAVIN1Q6NZI2 390 aaKnown RBP13.48□□□□□ -0.25
PTPN4-201ENST00000263708 LRRCC1Q9C099 1032 aa13.48□□□□□ -0.25
PTPN4-201ENST00000263708 CCDC69A6NI79 296 aa13.48□□□□□ -0.25
PTPN4-201ENST00000263708 DDX23Q9BUQ8 820 aaKnown RBP13.48□□□□□ -0.25
PTPN4-201ENST00000263708 COMMD10Q9Y6G5 202 aa13.48□□□□□ -0.25
PTPN4-201ENST00000263708 BCCIPQ9P287 314 aaKnown RBP eCLIP13.48□□□□□ -0.25
PTPN4-201ENST00000263708 ZNF428Q96B54 188 aa13.47□□□□□ -0.25
PTPN4-201ENST00000263708 IQCEQ6IPM2 695 aa13.47□□□□□ -0.25
PTPN4-201ENST00000263708 JAKMIP3Q5VZ66 844 aa13.47□□□□□ -0.25
PTPN4-201ENST00000263708 ZSCAN29Q8IWY8 852 aaPredicted RBP13.47□□□□□ -0.25
PTPN4-201ENST00000263708 NUP133Q8WUM0 1156 aa13.47□□□□□ -0.25
PTPN4-201ENST00000263708 SOGA3Q5TF21 947 aa13.47□□□□□ -0.25
PTPN4-201ENST00000263708 C22orf23Q9BZE7 217 aa13.47□□□□□ -0.25
PTPN4-201ENST00000263708 CCDC113Q9H0I3 377 aa13.47□□□□□ -0.25
PTPN4-201ENST00000263708 DNAI2Q9GZS0 605 aa13.46□□□□□ -0.25
PTPN4-201ENST00000263708 MAP2K1Q02750 393 aaPredicted RBP13.46□□□□□ -0.25
PTPN4-201ENST00000263708 STK3Q13188 491 aa13.46□□□□□ -0.25
PTPN4-201ENST00000263708 CARMIL1Q5VZK9 1371 aa13.46□□□□□ -0.25
PTPN4-201ENST00000263708 MTERF4Q7Z6M4 381 aaKnown RBP13.46□□□□□ -0.26
PTPN4-201ENST00000263708 POTEJP0CG39 1038 aa13.46□□□□□ -0.26
PTPN4-201ENST00000263708 CCDC144AA2RUR9 1427 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 EIF3JO75822 258 aaKnown RBP13.45□□□□□ -0.26
PTPN4-201ENST00000263708 KIAA1328Q86T90 577 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTPN4-201ENST00000263708 DACH1Q9UI36 760 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 CFAP45Q9UL16 551 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 PIBF1Q8WXW3 757 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 NFKBIBQ15653 356 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 PPM1EQ8WY54 764 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 PAXIP1Q6ZW49 1069 aaPredicted RBP13.45□□□□□ -0.26
PTPN4-201ENST00000263708 PLCD3Q8N3E9 789 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 RBM10P98175 930 aaKnown RBP13.45□□□□□ -0.26
PTPN4-201ENST00000263708 TTC16Q8NEE8 873 aa13.45□□□□□ -0.26
PTPN4-201ENST00000263708 FIBPO43427 364 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 TRIM22Q8IYM9 498 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 DRC1Q96MC2 740 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 HOMER2Q9NSB8 354 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 CCDC158Q5M9N0 1113 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 JMYQ8N9B5 988 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 STRN4Q9NRL3 753 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 ME1P48163 572 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 RAB3GAP2Q9H2M9 1393 aa13.44□□□□□ -0.26
PTPN4-201ENST00000263708 MAPK8IP2Q13387 824 aaPredicted RBP13.44□□□□□ -0.26
PTPN4-201ENST00000263708 ERLIN1O75477 346 aa13.43□□□□□ -0.26
PTPN4-201ENST00000263708 APAF1O14727 1248 aa13.43□□□□□ -0.26
PTPN4-201ENST00000263708 CCDC102AQ96A19 550 aa13.43□□□□□ -0.26
PTPN4-201ENST00000263708 GOPCQ9HD26 462 aa13.43□□□□□ -0.26
PTPN4-201ENST00000263708 CDC45O75419 566 aa13.43□□□□□ -0.26
PTPN4-201ENST00000263708 USP5P45974 858 aa13.43□□□□□ -0.26
PTPN4-201ENST00000263708 UBE4AQ14139 1066 aa13.43□□□□□ -0.26
PTPN4-201ENST00000263708 BMP2KQ9NSY1 1161 aaPredicted RBP13.42□□□□□ -0.26
PTPN4-201ENST00000263708 PDCP20941 246 aa13.42□□□□□ -0.26
PTPN4-201ENST00000263708 TICAM2Q86XR7 235 aa13.42□□□□□ -0.26
PTPN4-201ENST00000263708 HIP1O00291 1037 aa13.42□□□□□ -0.26
PTPN4-201ENST00000263708 EPB41L2O43491 1005 aaKnown RBP13.42□□□□□ -0.26
PTPN4-201ENST00000263708 ERICH4A6NGS2 130 aa13.41□□□□□ -0.26
PTPN4-201ENST00000263708 TAF4BQ92750 862 aa13.41□□□□□ -0.26
PTPN4-201ENST00000263708 TNMDQ9H2S6 317 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms