RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TCP11L2Q8N4U5 519 aa16.98■□□□□ 0.31
LDLR-201ENST00000252444 ERVK-7P63135 1459 aa16.97■□□□□ 0.31
LDLR-201ENST00000252444 NKTRP30414 1462 aaKnown RBP16.97■□□□□ 0.31
LDLR-201ENST00000252444 PRKAR2BP31323 418 aa16.97■□□□□ 0.31
LDLR-201ENST00000252444 PDE3AQ14432 1141 aa16.97■□□□□ 0.31
LDLR-201ENST00000252444 PPIP5K1Q6PFW1 1433 aa16.97■□□□□ 0.31
LDLR-201ENST00000252444 PRDM11Q9NQV5 511 aa16.97■□□□□ 0.31
LDLR-201ENST00000252444 NFE2L2Q16236 605 aa16.97■□□□□ 0.31
LDLR-201ENST00000252444 IL16Q14005 1332 aa16.96■□□□□ 0.31
LDLR-201ENST00000252444 GTF2E1P29083 439 aaPredicted RBP16.96■□□□□ 0.31
LDLR-201ENST00000252444 FGD1P98174 961 aa16.96■□□□□ 0.31
LDLR-201ENST00000252444 AGLP35573 1532 aa16.96■□□□□ 0.31
LDLR-201ENST00000252444 RGS3P49796 1198 aa16.96■□□□□ 0.31
LDLR-201ENST00000252444 TOM1O60784 492 aa16.95■□□□□ 0.3
LDLR-201ENST00000252444 KCNA6P17658 529 aa16.95■□□□□ 0.3
LDLR-201ENST00000252444 C19orf44Q9H6X5 657 aa16.95■□□□□ 0.3
LDLR-201ENST00000252444 ADAMTS8Q9UP79 889 aa16.95■□□□□ 0.3
LDLR-201ENST00000252444 HTATSF1O43719 755 aaKnown RBP16.94■□□□□ 0.3
LDLR-201ENST00000252444 NCBP3Q53F19 620 aaKnown RBP16.94■□□□□ 0.3
LDLR-201ENST00000252444 PRDM15P57071 1507 aaPredicted RBP16.94■□□□□ 0.3
LDLR-201ENST00000252444 RRP7AQ9Y3A4 280 aaKnown RBP16.94■□□□□ 0.3
LDLR-201ENST00000252444 SLC4A10Q6U841 1118 aa16.94■□□□□ 0.3
LDLR-201ENST00000252444 RUFY2Q8WXA3 655 aa16.94■□□□□ 0.3
LDLR-201ENST00000252444 CEBPAP49715 358 aaPredicted RBP16.93■□□□□ 0.3
LDLR-201ENST00000252444 SOS1Q07889 1333 aaPredicted RBP16.93■□□□□ 0.3
LDLR-201ENST00000252444 C9orf78Q9NZ63 289 aaPredicted RBP16.93■□□□□ 0.3
LDLR-201ENST00000252444 YEATS2Q9ULM3 1422 aa16.93■□□□□ 0.3
LDLR-201ENST00000252444 CCT4P50991 539 aaKnown RBP16.93■□□□□ 0.3
LDLR-201ENST00000252444 KIF6Q6ZMV9 814 aa16.93■□□□□ 0.3
LDLR-201ENST00000252444 TOM1L2Q6ZVM7 507 aa16.92■□□□□ 0.3
LDLR-201ENST00000252444 IFT57Q9NWB7 429 aa16.92■□□□□ 0.3
LDLR-201ENST00000252444 KIF3AQ9Y496 699 aa16.92■□□□□ 0.3
LDLR-201ENST00000252444 KDM5AP29375 1690 aaKnown RBP16.92■□□□□ 0.3
LDLR-201ENST00000252444 ERC1Q8IUD2 1116 aa16.92■□□□□ 0.3
LDLR-201ENST00000252444 SYNMO15061 1565 aa16.92■□□□□ 0.3
LDLR-201ENST00000252444 ZRSR1Q15695 479 aaKnown RBP16.91■□□□□ 0.3
LDLR-201ENST00000252444 EDC4Q6P2E9 1401 aaKnown RBP16.91■□□□□ 0.3
LDLR-201ENST00000252444 WAPLQ7Z5K2 1190 aa16.91■□□□□ 0.3
LDLR-201ENST00000252444 CDC42BPBQ9Y5S2 1711 aa16.91■□□□□ 0.3
LDLR-201ENST00000252444 POLR3AO14802 1390 aaPredicted RBP16.91■□□□□ 0.3
LDLR-201ENST00000252444 ZNF530Q6P9A1 599 aaPredicted RBP16.91■□□□□ 0.3
LDLR-201ENST00000252444 KRT28Q7Z3Y7 464 aa16.91■□□□□ 0.3
LDLR-201ENST00000252444 DISP3Q9P2K9 1392 aa16.9■□□□□ 0.3
LDLR-201ENST00000252444 INO80Q9ULG1 1556 aaPredicted RBP16.9■□□□□ 0.3
LDLR-201ENST00000252444 ZNF330Q9Y3S2 320 aaPredicted RBP16.9■□□□□ 0.3
LDLR-201ENST00000252444 LAMC1P11047 1609 aa16.9■□□□□ 0.3
LDLR-201ENST00000252444 GNAT3A8MTJ3 354 aa16.9■□□□□ 0.3
LDLR-201ENST00000252444 HMOX1P09601 288 aa16.89■□□□□ 0.3
LDLR-201ENST00000252444 SULT6B1Q6IMI4 303 aa16.89■□□□□ 0.3
LDLR-201ENST00000252444 CABP4P57796 275 aa16.89■□□□□ 0.29
LDLR-201ENST00000252444 UGGT1Q9NYU2 1555 aa16.89■□□□□ 0.29
LDLR-201ENST00000252444 ALDH1L2Q3SY69 923 aa16.89■□□□□ 0.29
LDLR-201ENST00000252444 FKBP5Q13451 457 aaPredicted RBP16.89■□□□□ 0.29
LDLR-201ENST00000252444 TEX13AQ9BXU3 409 aaPredicted RBP16.89■□□□□ 0.29
LDLR-201ENST00000252444 CHMP3Q9Y3E7 222 aa16.89■□□□□ 0.29
LDLR-201ENST00000252444 ERC2O15083 957 aa16.88■□□□□ 0.29
LDLR-201ENST00000252444 G3V3G9 751 aa16.88■□□□□ 0.29
LDLR-201ENST00000252444 DCAF8Q5TAQ9 597 aa16.88■□□□□ 0.29
LDLR-201ENST00000252444 B4GALNT3Q6L9W6 998 aa16.88■□□□□ 0.29
LDLR-201ENST00000252444 FAM135BQ49AJ0 1406 aa16.88■□□□□ 0.29
LDLR-201ENST00000252444 ACEP12821 1306 aa16.87■□□□□ 0.29
LDLR-201ENST00000252444 ARHGEF10O15013 1369 aa16.87■□□□□ 0.29
LDLR-201ENST00000252444 TSPOAP1O95153 1857 aa16.86■□□□□ 0.29
LDLR-201ENST00000252444 G3BP1Q13283 466 aaKnown RBP eCLIP16.86■□□□□ 0.29
LDLR-201ENST00000252444 TWISTNBQ3B726 338 aaPredicted RBP16.86■□□□□ 0.29
LDLR-201ENST00000252444 RIC3Q7Z5B4 369 aa16.86■□□□□ 0.29
LDLR-201ENST00000252444 AMOTL1Q8IY63 956 aa16.86■□□□□ 0.29
LDLR-201ENST00000252444 PARD3Q8TEW0 1356 aa16.86■□□□□ 0.29
LDLR-201ENST00000252444 CSPP1Q1MSJ5 1256 aa16.85■□□□□ 0.29
LDLR-201ENST00000252444 NOL10Q9BSC4 688 aaKnown RBP16.85■□□□□ 0.29
LDLR-201ENST00000252444 CDCA7Q9BWT1 371 aaPredicted RBP16.85■□□□□ 0.29
LDLR-201ENST00000252444 SPHKAPQ2M3C7 1700 aa16.85■□□□□ 0.29
LDLR-201ENST00000252444 SPATA31E1Q6ZUB1 1445 aa16.85■□□□□ 0.29
LDLR-201ENST00000252444 MFAP1P55081 439 aaKnown RBP16.85■□□□□ 0.29
LDLR-201ENST00000252444 FLT4P35916 1363 aa16.84■□□□□ 0.29
LDLR-201ENST00000252444 ARHGEF40Q8TER5 1519 aa16.84■□□□□ 0.29
LDLR-201ENST00000252444 C11orf95C9JLR9 678 aaPredicted RBP16.84■□□□□ 0.29
LDLR-201ENST00000252444 GCC1Q96CN9 775 aa16.84■□□□□ 0.29
LDLR-201ENST00000252444 DNAJC5Q9H3Z4 198 aa16.84■□□□□ 0.29
LDLR-201ENST00000252444 ZMYM4Q5VZL5 1548 aa16.84■□□□□ 0.29
LDLR-201ENST00000252444 HIP1O00291 1037 aa16.83■□□□□ 0.29
LDLR-201ENST00000252444 SF3B2Q13435 895 aaKnown RBP16.83■□□□□ 0.29
LDLR-201ENST00000252444 A2ML1A8K2U0 1454 aa16.83■□□□□ 0.28
LDLR-201ENST00000252444 REC8O95072 547 aa16.83■□□□□ 0.28
LDLR-201ENST00000252444 UBTFL1P0CB47 393 aaPredicted RBP16.83■□□□□ 0.28
LDLR-201ENST00000252444 CCDC27Q2M243 656 aa16.83■□□□□ 0.28
LDLR-201ENST00000252444 ADGRB3O60242 1522 aa16.83■□□□□ 0.28
LDLR-201ENST00000252444 EIF2S2P20042 333 aaKnown RBP16.83■□□□□ 0.28
LDLR-201ENST00000252444 NPHP4O75161 1426 aaPredicted RBP16.82■□□□□ 0.28
LDLR-201ENST00000252444 TMPOP42166 694 aaKnown RBP16.82■□□□□ 0.28
LDLR-201ENST00000252444 NUTM2GQ5VZR2 741 aa16.82■□□□□ 0.28
LDLR-201ENST00000252444 CCDC34Q96HJ3 373 aa16.82■□□□□ 0.28
LDLR-201ENST00000252444 ATP7BP35670 1465 aa16.82■□□□□ 0.28
LDLR-201ENST00000252444 CLUAP1Q96AJ1 413 aa16.81■□□□□ 0.28
LDLR-201ENST00000252444 BABAM1Q9NWV8 329 aa16.81■□□□□ 0.28
LDLR-201ENST00000252444 HSP90AB3PQ58FF7 597 aa16.81■□□□□ 0.28
LDLR-201ENST00000252444 IL27Q8NEV9 243 aa16.81■□□□□ 0.28
LDLR-201ENST00000252444 ST18O60284 1047 aa16.8■□□□□ 0.28
LDLR-201ENST00000252444 IFIT2P09913 472 aaKnown RBP16.8■□□□□ 0.28
LDLR-201ENST00000252444 STARD3NLO95772 234 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms