RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Maco1Q7TQE6 664 aaKnown RBP15.68■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Ric3Q8BPM6 367 aa15.68■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Tulp4Q9JIL5 1547 aa15.68■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Gapvd1Q6PAR5 1458 aa15.68■□□□□ 0.1
Clcn3-201ENSMUST00000004430 PtmsQ9D0J8 101 aaKnown RBP15.68■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Polr3gQ6NXY9 223 aa15.67■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Filip1lQ6P6L0 1131 aa15.66■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Pes1Q9EQ61 584 aaKnown RBP15.66■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Duxf3A0A0N4SV92 674 aa15.65■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Babam1Q3UI43 333 aa15.65■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Kidins220E9Q9B7 1793 aa15.65■□□□□ 0.1
Clcn3-201ENSMUST00000004430 ShprhQ7TPQ3 1674 aa15.65■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Robo2Q7TPD3 1470 aa15.65■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Pdia4P08003 638 aaKnown RBP15.65■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Utp3Q9JI13 469 aaKnown RBP15.65■□□□□ 0.1
Clcn3-201ENSMUST00000004430 Catsper2A2ARP9 588 aa15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Rassf8Q8CJ96 419 aa15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Zmym4A2A791 1549 aaKnown RBP15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 PtprtQ99M80 1454 aa15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Setd1aE9PYH6 1716 aa15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Slc4a10Q5DTL9 1118 aa15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Gripap1Q8VD04 806 aa15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Sh3bp5Q9Z131 463 aa15.64■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Swt1Q9DBQ9 907 aa15.63■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Cgnl1Q6AW69 1298 aa15.63■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Trim30aP15533 496 aa15.63■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Sbno1Q689Z5 1390 aa15.62■□□□□ 0.09
Clcn3-201ENSMUST00000004430 St18Q80TY4 1045 aa15.62■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Iffo2Q8R2V2 512 aa15.62■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Stk31Q99MW1 1018 aa15.62■□□□□ 0.09
Clcn3-201ENSMUST00000004430 MecomP14404 1042 aa15.61■□□□□ 0.09
Clcn3-201ENSMUST00000004430 OvosQ3UU35 1456 aa15.61■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Sf3a1Q8K4Z5 791 aaKnown RBP15.61■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Nos1Q9Z0J4 1429 aa15.6■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Cald1E9QA15 768 aaKnown RBP15.6■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Cavin4A2AMM0 362 aa15.59■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Zfyve16Q80U44 1528 aa15.59■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Znf518aB2RRF6 1478 aaKnown RBP15.59■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Gm16486A0A1D5RMD1 1434 aa15.59■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Hmox1P14901 289 aa15.59■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Zranb1Q7M760 708 aa15.59■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Terf2O35144 541 aa15.58■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Kif4P33174 1231 aa15.58■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Txndc2Q6P902 515 aa15.58■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Cetn4Q8K4K1 168 aa15.58■□□□□ 0.09
Clcn3-201ENSMUST00000004430 Q9D9H8 365 aa15.58■□□□□ 0.08
Clcn3-201ENSMUST00000004430 DmtnQ9WV69 405 aa15.58■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Pnmal2G3X9N3 661 aa15.57■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Tex14Q7M6U3 1450 aa15.57■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Xrn1P97789 1719 aaKnown RBP15.57■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Adam1bQ8R534 806 aa15.57■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Rlbp1Q9Z275 317 aa15.57■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Tomm22Q9CPQ3 142 aa15.57■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Plch2A2AP18 1501 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 AatkQ80YE4 1365 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Kdm2bQ6P1G2 1309 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Il4rP16382 810 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Atp6v1dP57746 247 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Psme1P97371 249 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Uspl1Q3ULM6 1089 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Atp2b2Q9R0K7 1198 aa15.56■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Gnai1B2RSH2 354 aa15.55■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Fam13bQ8K2H3 851 aa15.55■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Smarca5Q91ZW3 1051 aaKnown RBP15.55■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Gnai3Q9DC51 354 aa15.55■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Cpa2Q504N0 417 aa15.55■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Clstn1Q9EPL2 979 aa15.55■□□□□ 0.08
Clcn3-201ENSMUST00000004430 AampJ3QN89 436 aa15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Zkscan1Q8BGS3 561 aaKnown RBP15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Syce3B5KM66 88 aa15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Gm973E9Q295 1059 aa15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Cabp2Q9JLK4 216 aa15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Gsto1O09131 240 aa15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 CarsQ9ER72 831 aaKnown RBP15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Mad1l1Q9WTX8 717 aaKnown RBP15.54■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Abca17E9PX95 1733 aa15.53■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Usp48Q3V0C5 1052 aa15.53■□□□□ 0.08
Clcn3-201ENSMUST00000004430 1700010I14RikQ7TPG0 532 aa15.53■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Cabp4Q8VHC5 271 aa15.53■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Stk3Q9JI10 497 aa15.53■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Cyp46a1Q9WVK8 500 aa15.53■□□□□ 0.08
Clcn3-201ENSMUST00000004430 AnkarA2RT91 1465 aa15.52■□□□□ 0.08
Clcn3-201ENSMUST00000004430 PalmQ9Z0P4 383 aa15.52■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Abca6Q8K441 1624 aa15.52■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Ptch1Q61115 1434 aa15.52■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Smarce1O54941 411 aaKnown RBP15.52■□□□□ 0.08
Clcn3-201ENSMUST00000004430 RdxP26043 583 aaKnown RBP15.52■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Tpm2P58774 284 aa15.52■□□□□ 0.08
Clcn3-201ENSMUST00000004430 Ppp1r3fQ9JIG4 799 aa15.52■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Uggt2E9Q4X2 1504 aa15.52■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Tbc1d32Q3URV1 1296 aa15.51■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Abca9Q8K449 1623 aa15.51■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Olfml1Q8BSH2 233 aa15.51■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Mical1Q8VDP3 1048 aa15.51■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Gli2Q0VGT2 1544 aa15.51■□□□□ 0.07
Clcn3-201ENSMUST00000004430 FosbP13346 338 aa15.51■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Ppip5k2Q6ZQB6 1129 aa15.51■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Kif20aP97329 887 aa15.5■□□□□ 0.07
Clcn3-201ENSMUST00000004430 Myo3aQ8K3H5 1613 aa15.5■□□□□ 0.07
Clcn3-201ENSMUST00000004430 AU019823E9PUQ3 292 aa15.5■□□□□ 0.07
Retrieved 100 of 22,080 RNA–protein pairs in 30.4 ms