RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SLFN11Q7Z7L1 901 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 C12orf57Q99622 126 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GGA3Q9NZ52 723 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MORF4L1Q9UBU8 362 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CD300AQ9UGN4 299 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GRID1Q9ULK0 1009 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 BAIAP2Q9UQB8 552 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 DAGLAQ9Y4D2 1042 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TUBAL3A6NHL2 446 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ERVK-21P61565 698 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 XIAPP98170 497 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 KLHL22Q53GT1 634 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 DCUN1D3Q8IWE4 304 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 OR52K1Q8NGK4 314 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PROX1Q92786 737 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 KCNS3Q9BQ31 491 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 WWP1Q9H0M0 922 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SPON1Q9HCB6 807 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TRIM36Q9NQ86 728 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SMYD2Q9NRG4 433 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF70Q9UC06 446 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SLC24A2Q9UI40 661 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SPACA6W5XKT8 324 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 FHAD1B1AJZ9 1412 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MAGEA13PA6NCF6 341 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ACOD1A6NK06 481 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PRAMEF2O60811 474 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 RNF224P0DH78 156 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PET100P0DJ07 73 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ATP5JP18859 108 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NFKB1P19838 968 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GUCY1A3Q02108 690 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 DSC1Q08554 894 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TRAP1Q12931 704 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 XRCC4Q13426 336 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ELOAQ14241 798 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM132BQ14DG7 1078 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MED22Q15528 200 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CNPY1Q3B7I2 92 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PRAMEF20Q5VT98 475 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 RETSATQ6NUM9 610 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MAGEB6Q8N7X4 407 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 LPCAT1Q8NF37 534 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GRPEL2Q8TAA5 225 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ENKURQ8TC29 256 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM246Q9BRR3 403 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MTG2Q9H4K7 406 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 IFNKQ9P0W0 207 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 IFT52Q9Y366 437 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHA5Q9Y5H7 936 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GNG14A0A1W2PPG7 69 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 M0R036 132 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PRPSAP2O60256 369 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SOCS5O75159 536 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ERVK-10P10266 1014 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SFTPCP11686 197 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PSMC2P35998 433 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SYKP43405 635 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MPP1Q00013 466 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MAT1AQ00266 395 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MAPK7Q13164 816 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PRR5LQ6MZQ0 368 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF454Q8N9F8 522 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 RP9Q8TA86 221 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 APOPT1Q96IL0 206 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PPM1MQ96MI6 270 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GINS4Q9BRT9 223 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TAF1DQ9H5J8 278 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CHODLQ9H9P2 273 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ETNK2Q9NVF9 386 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SEPT9Q9UHD8 586 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NFU1Q9UMS0 254 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NEDD8-MDP1E9PL57 170 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PENKP01210 267 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CD97P48960 835 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CKAP4Q07065 602 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 KIAA1161Q6NSJ0 714 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 UBQLNLQ8IYU4 475 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 OR5T1Q8NG75 326 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MFSD3Q96ES6 412 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 HSPBAP1Q96EW2 488 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC120Q96HB5 630 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 TM9SF2Q99805 663 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 VCX2Q9H322 139 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NGBQ9NPG2 151 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 EMILIN3Q9NT22 766 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ADPRHL2Q9NX46 363 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NDOR1Q9UHB4 597 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 A0A1B0GVL5 298 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 BIRC5O15392 142 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GALP22466 123 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SP100P23497 879 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 IL15P40933 162 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 ACADSBP45954 432 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 B2MP61769 119 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 SMTNL2Q2TAL5 461 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NOMO2Q5JPE7 1267 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 Q6ZUG5 572 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 MIGA2Q7L4E1 593 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms