RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MAFO75444 373 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TCF3P15923 654 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NPR3P17342 541 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 STX2P32856 288 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SLC1A1P43005 524 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 PURAQ00577 322 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 COBLL1Q53SF7 1204 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TTC39BQ5VTQ0 682 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SCAIQ8N9R8 606 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 C1orf131Q8NDD1 294 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SLC2A14Q8TDB8 520 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RIT1Q92963 219 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 FERD3LQ96RJ6 166 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 MYLK2Q9H1R3 596 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 YY1AP1Q9H869 796 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CNOT10Q9H9A5 744 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TDP1Q9NUW8 608 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 APEX2Q9UBZ4 518 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 MRTO4Q9UKD2 239 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 BRPF3Q9ULD4 1205 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 FAM32AQ9Y421 112 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 FMN2Q9NZ56 1722 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 VEGFDO43915 354 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 APRTP07741 180 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 MAPTP10636 758 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CES1P23141 567 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SOAT1P35610 550 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 MAGEA9P43362 315 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 KCNJ5P48544 419 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 PDX1P52945 283 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TAF10Q12962 218 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CBX2Q14781 532 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 KRT72Q14CN4 511 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NECTIN1Q15223 517 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TRIM71Q2Q1W2 868 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TAGAPQ8N103 731 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NCLNQ969V3 563 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TMEM209Q96SK2 561 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 GSDMCQ9BYG8 508 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 EML4Q9HC35 981 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RBM22Q9NW64 420 aaKnown RBP eCLIP5.13□□□□□ -1.591e-6■■■■■ 27.8
SCN1A-218ENST00000640036 C2CD2Q9Y426 696 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ACACAQ13085 2346 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 NRP1O14786 923 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RTN2O75298 545 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 EEF1DP29692 281 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 FMO5P49326 533 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 FNTAP49354 379 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CLNS1AP54105 237 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ZC2HC1CQ53FD0 456 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 CERCAMQ5T4B2 595 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 DNAJB7Q7Z6W7 309 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 IGDCC4Q8TDY8 1250 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 PBKQ96KB5 322 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 MCEEQ96PE7 176 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 INTS13Q9NVM9 706 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ZFATQ9P243 1243 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 DERAQ9Y315 318 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ATG2BQ96BY7 2078 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 SLC38A8A6NNN8 435 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 H3BNH8 94 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 OR6A2O95222 327 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 RPA3P35244 121 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 BRCC3P46736 316 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 BOP1Q14137 746 aaKnown RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 TRIP4Q15650 581 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ATAD3BQ5T9A4 648 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 LRRC52Q8N7C0 313 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 LMX1AQ8TE12 382 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 OTULINQ96BN8 352 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 MED8Q96G25 268 aa5.13□□□□□ -1.59
SCN1A-218ENST00000640036 ZBTB14O43829 449 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 CYP7B1O75881 506 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 PLGP00747 810 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-218ENST00000640036 ERCC1P07992 297 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-218ENST00000640036 MMEP08473 750 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 IGFALSP35858 605 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 SESN2P58004 480 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-218ENST00000640036 HNRNPKP61978 463 aaKnown RBP eCLIP5.12□□□□□ -1.59
SCN1A-218ENST00000640036 SLC20A2Q08357 652 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 BRD3Q15059 726 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 KRT71Q3SY84 523 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 TTC23Q5W5X9 447 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 ICE2Q659A1 982 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 VSIG1Q86XK7 387 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 DEFB119Q8N690 84 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 SH3RF2Q8TEC5 729 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 MYLPFQ96A32 169 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 QRFPRQ96P65 431 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 VPS11Q9H270 941 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 METTL5Q9NRN9 209 aaKnown RBP5.12□□□□□ -1.59
SCN1A-218ENST00000640036 TBC1D13Q9NVG8 400 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 KLHL14Q9P2G3 628 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 POLR1DQ9Y2S0 133 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 SAR1BQ9Y6B6 198 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 PIAS3Q9Y6X2 628 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 CEP250Q9BV73 2442 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 TMEM191CA6NGB0 347 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 CAPN14A8MX76 684 aa5.12□□□□□ -1.59
SCN1A-218ENST00000640036 SOAT2O75908 522 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms