RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SPEM2Q0P670 501 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 C14orf80Q86SX3 495 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 SFTPA1Q8IWL2 248 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 EZH1Q92800 747 aaPredicted RBP18.65■□□□□ 0.58
CLN3-239ENST00000628023 IGSF8Q969P0 613 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 BTBD6Q96KE9 485 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 C1orf74Q96LT6 269 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 NCAPGQ9BPX3 1015 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 ABCB8Q9NUT2 735 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 FBXO10Q9UK96 956 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 INTUQ9ULD6 942 aa18.65■□□□□ 0.58
CLN3-239ENST00000628023 EPN1Q9Y6I3 576 aaPredicted RBP18.65■□□□□ 0.58
CLN3-239ENST00000628023 E9PAM4 449 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 K7EQS6 105 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 HRO43593 1189 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 FOXD2O60548 495 aaPredicted RBP18.64■□□□□ 0.57
CLN3-239ENST00000628023 NDUFA10O95299 355 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 CISD3P0C7P0 127 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 TIE1P35590 1138 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 SSR1P43307 286 aaKnown RBP18.64■□□□□ 0.57
CLN3-239ENST00000628023 AIF1P55008 147 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 ACAP1Q15027 740 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 C2orf27AQ580R0 203 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 RPLP0P6Q8NHW5 317 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 WFIKKN2Q8TEU8 576 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 CIPCQ9C0C6 399 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 OR12D3Q9UGF7 316 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 PCSK1NQ9UHG2 260 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 GGA2Q9UJY4 613 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 SLC8A2Q9UPR5 921 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 SLC27A6Q9Y2P4 619 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 PCDHA13Q9Y5I0 950 aa18.64■□□□□ 0.57
CLN3-239ENST00000628023 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 MED19A0JLT2 244 aaPredicted RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 EIF3CLB5ME19 914 aaKnown RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 PABPC1P11940 636 aaKnown RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 MIPP30301 263 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 HLA-FP30511 346 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 DMWDQ09019 674 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 SCAPQ12770 1279 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 ZNF177Q13360 481 aaPredicted RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 GEN1Q17RS7 908 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 RWDD4Q6NW29 188 aaKnown RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 CHST9Q7L1S5 443 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 WDR5BQ86VZ2 330 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 RHOT2Q8IXI1 618 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 AHI1Q8N157 1196 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 CCAR2Q8N163 923 aaKnown RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 FIBINQ8TAL6 211 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 SLC35G2Q8TBE7 412 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 WFDC5Q8TCV5 224 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 UCMAQ8WVF2 138 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 RFFLQ8WZ73 363 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 ACDQ96AP0 544 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 EIF3CQ99613 913 aaKnown RBP18.63■□□□□ 0.57
CLN3-239ENST00000628023 RTKNQ9BST9 563 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 OSBPL2Q9H1P3 480 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 LCMT1Q9UIC8 334 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 FZD10Q9ULW2 581 aa18.63■□□□□ 0.57
CLN3-239ENST00000628023 CCDC163A0A0D9SF12 145 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 TMEM110-MUSTN1A8MSY1 372 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 PRRT4C9JH25 899 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 LRCH4O75427 683 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 CLDN11O75508 207 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 LCA5LO95447 670 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 TGM1P22735 817 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 IRAK1P51617 712 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 CDH4P55283 916 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 MRPS21P82921 87 aaKnown RBP18.62■□□□□ 0.57
CLN3-239ENST00000628023 LMAN2Q12907 356 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 DAB2IPQ5VWQ8 1189 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 RNF43Q68DV7 783 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 RAD9BQ6WBX8 426 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 TRMT11Q7Z4G4 463 aaKnown RBP18.62■□□□□ 0.57
CLN3-239ENST00000628023 TFAP2DQ7Z6R9 452 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 ZNF513Q8N8E2 541 aaPredicted RBP18.62■□□□□ 0.57
CLN3-239ENST00000628023 NIPA2Q8N8Q9 360 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 USP33Q8TEY7 942 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 TBC1D31Q96DN5 1066 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 EPAS1Q99814 870 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 ZYG11BQ9C0D3 744 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 PARD6AQ9NPB6 346 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 OSGEPQ9NPF4 335 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 AP4E1Q9UPM8 1137 aa18.62■□□□□ 0.57
CLN3-239ENST00000628023 ATG2BQ96BY7 2078 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 A0A0A0MRY4 1105 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 CREB3O43889 395 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 MOCS3O95396 460 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 CD70P32970 193 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 PCK1P35558 622 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 NOP2P46087 812 aaKnown RBP18.61■□□□□ 0.57
CLN3-239ENST00000628023 OXCT1P55809 520 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 SRSF5Q13243 272 aaKnown RBP18.61■□□□□ 0.57
CLN3-239ENST00000628023 EIF4HQ15056 248 aaKnown RBP18.61■□□□□ 0.57
CLN3-239ENST00000628023 CSRP2Q16527 193 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 KIAA1328Q86T90 577 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 TMEM139Q8IV31 216 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 ZNF683Q8IZ20 524 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 ARFGAP1Q8N6T3 406 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 PEBP4Q96S96 227 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms