RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 DCLK2Q8N568 766 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 OR52K2Q8NGK3 314 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 ARNTL2Q8WYA1 636 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 ZFYVE19Q96K21 471 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 WDR83Q9BRX9 315 aaKnown RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 CAB39LQ9H9S4 337 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 PRM3Q9NNZ6 103 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 UBN1Q9NPG3 1134 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 INTS9Q9NV88 658 aaKnown RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 NFS1Q9Y697 457 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 GPR39O43194 453 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 FGF18O76093 207 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 HDCP19113 662 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 SMAD3P84022 425 aaKnown RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 SLC10A7Q0GE19 358 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 TCEA2Q15560 299 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 CYP1B1Q16678 543 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 HSP90AA5PQ58FG0 334 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 DNAJB7Q7Z6W7 309 aaPredicted RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 EXOC3L1Q86VI1 746 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 PPIL6Q8IXY8 311 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 ATPAF2Q8N5M1 289 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 EFHBQ8N7U6 833 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 SGF29Q96ES7 293 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 ZNF419Q96HQ0 510 aaPredicted RBP10.81□□□□□ -0.68
VPS11-208ENST00000621676 TMBIM4Q9HC24 238 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 RPS6KL1Q9Y6S9 549 aa10.81□□□□□ -0.68
VPS11-208ENST00000621676 E9PAM4 449 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 SNAP91O60641 907 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 DAB1O75553 588 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 DGKIO75912 1065 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 VNN2O95498 520 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 PAPOLAP51003 745 aaKnown RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 HNRNPH2P55795 449 aaKnown RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 DLG2Q15700 870 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 LRRC38Q5VT99 294 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 ALS2CLQ60I27 953 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 HIBCHQ6NVY1 386 aaPredicted RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 BHLHA9Q7RTU4 235 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 NIPA2Q8N8Q9 360 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 ZNF669Q96BR6 464 aaPredicted RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 VWCEQ96DN2 955 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 TCEAL4Q96EI5 215 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 HMCESQ96FZ2 354 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 XPO6Q96QU8 1125 aaKnown RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 AGAP2Q99490 1192 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 ELAC2Q9BQ52 826 aaKnown RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 MECRQ9BV79 373 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 MCOLN1Q9GZU1 580 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 SUDS3Q9H7L9 328 aaPredicted RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 SLCO1B3Q9NPD5 702 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 MED4Q9NPJ6 270 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 ZNF358Q9NW07 568 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 C2orf71A6NGG8 1288 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 OR51F1A6NGY5 319 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 PPFIA2O75334 1257 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 STAU1O95793 577 aaKnown RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 APOEP02649 317 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 FGBP02675 491 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 HSPA8P11142 646 aaKnown RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 MSH2P43246 934 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 GLRBP48167 497 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 PDK2Q15119 407 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 DPYSL2Q16555 572 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 ZSCAN26Q16670 478 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 FBXO46Q6PJ61 603 aaPredicted RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 ZCCHC23Q6ZST2 131 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 TTC13Q8NBP0 860 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 TOP1MTQ969P6 601 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 MTG2Q9H4K7 406 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 PCDH9Q9HC56 1237 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 ABCC13Q9NSE7 274 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 G3BP2Q9UN86 482 aaKnown RBP10.8□□□□□ -0.68
VPS11-208ENST00000621676 FIS1Q9Y3D6 152 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 KCTD3Q9Y597 815 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 PSAT1Q9Y617 370 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 TRANK1O15050 2925 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 SHROOM3Q8TF72 1996 aa10.8□□□□□ -0.68
VPS11-208ENST00000621676 SLC38A8A6NNN8 435 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 K7ERQ8 282 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 IRAK2O43187 625 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 DSC2Q02487 901 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 GALNT3Q14435 633 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 ZNF460Q14592 562 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 SLC45A4Q5BKX6 768 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 PPM1JQ5JR12 505 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 OR6P1Q8NGX9 317 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 MUC3BQ9H195 1237 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 SP110Q9HB58 689 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 BPIFA1Q9NP55 256 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 MRPL17Q9NRX2 175 aaKnown RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS11-208ENST00000621676 SYBUQ9NX95 663 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CPSF2Q9P2I0 782 aaKnown RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 IPO11Q9UI26 975 aaKnown RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 DCTN4Q9UJW0 460 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 DSEQ9UL01 958 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CLUHO75153 1309 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 TCRBV9S1A1TA0A576 114 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 ITGAVP06756 1048 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms