RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 CSKP41240 450 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 IRAK1P51617 712 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 HDAC4P56524 1084 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 ZNF177Q13360 481 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 FNDC3BQ53EP0 1204 aaKnown RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 USP39Q53GS9 565 aaKnown RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 PITRM1Q5JRX3 1037 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 KIAA1211LQ6NV74 962 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 PRR23BQ6ZRT6 265 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 DNAAF5Q86Y56 855 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 ZNF683Q8IZ20 524 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 PGBD3Q8N328 593 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 OR8K1Q8NGG5 319 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 ZNF653Q96CK0 615 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 CD248Q9HCU0 757 aa17.37■□□□□ 0.37
TRIM28-215ENST00000601150 CNOT8Q9UFF9 292 aaKnown RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 INTS6Q9UL03 887 aaKnown RBP17.37■□□□□ 0.37
TRIM28-215ENST00000601150 NYNRINQ9P2P1 1898 aaKnown RBP17.36■□□□□ 0.37
TRIM28-215ENST00000601150 PIEZO1Q92508 2521 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 DRGXA6NNA5 263 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 E9PAM4 449 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 SYNCRIPO60506 623 aaKnown RBP17.36■□□□□ 0.37
TRIM28-215ENST00000601150 GABRG2P18507 467 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 PRKCHP24723 683 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 CDH4P55283 916 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 PTPRNQ16849 979 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 TSR1Q2NL82 804 aaKnown RBP17.36■□□□□ 0.37
TRIM28-215ENST00000601150 CXorf57Q6NSI4 855 aaKnown RBP17.36■□□□□ 0.37
TRIM28-215ENST00000601150 PPP1R9BQ96SB3 815 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 DNAJC7Q99615 494 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 TRIM5Q9C035 493 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 RBSNQ9H1K0 784 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 ZNHIT6Q9NWK9 470 aaKnown RBP17.36■□□□□ 0.37
TRIM28-215ENST00000601150 ARHGAP20Q9P2F6 1191 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 SCINQ9Y6U3 715 aa17.36■□□□□ 0.37
TRIM28-215ENST00000601150 IGLV3-10A0A075B6K4 115 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 A0A087X0T9 212 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 AP5Z1O43299 807 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 SRGAP2O75044 1071 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 FAM228BP0C875 321 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 PLK1P53350 603 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 ST8SIA6P61647 398 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 ARID5BQ14865 1188 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 LPAL2Q16609 132 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 PLEKHG6Q3KR16 790 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 LAIR1Q6GTX8 287 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 TMC6Q7Z403 805 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 APCDD1Q8J025 514 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 CCDC185Q8N715 623 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 NTAN1Q96AB6 310 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 ERLEC1Q96DZ1 483 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 OSBPL2Q9H1P3 480 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 TMEM245Q9H330 911 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 MRPL47Q9HD33 250 aaKnown RBP17.35■□□□□ 0.37
TRIM28-215ENST00000601150 MYO1AQ9UBC5 1043 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 TBC1D30Q9Y2I9 924 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 VPS13AQ96RL7 3174 aa17.35■□□□□ 0.37
TRIM28-215ENST00000601150 TMEM191CA6NGB0 347 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 CNTN5O94779 1100 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 EPHX1P07099 455 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 SRPRAP08240 638 aaKnown RBP17.34■□□□□ 0.37
TRIM28-215ENST00000601150 NDUFV2P19404 249 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 PSMA2P25787 234 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 MZF1P28698 734 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-215ENST00000601150 EIF4A3P38919 411 aaKnown RBP17.34■□□□□ 0.37
TRIM28-215ENST00000601150 ECT2LQ008S8 904 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 OGDHQ02218 1023 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 NRG1Q02297 640 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-215ENST00000601150 BYSLQ13895 437 aaKnown RBP17.34■□□□□ 0.37
TRIM28-215ENST00000601150 ALFQ53S48 1182 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 SCYL2Q6P3W7 929 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 THADAQ6YHU6 1953 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-215ENST00000601150 SLFN11Q7Z7L1 901 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 C11orf74Q86VG3 221 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 CEP192Q8TEP8 1941 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 RUBCNQ92622 972 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 SPACA7Q96KW9 195 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 ZYG11BQ9C0D3 744 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 MPP6Q9NZW5 540 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 NCDNQ9UBB6 729 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 PPARGC1AQ9UBK2 798 aaKnown RBP17.34■□□□□ 0.37
TRIM28-215ENST00000601150 OR12D3Q9UGF7 316 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 ERVW-1Q9UQF0 538 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 INVSQ9Y283 1065 aa17.34■□□□□ 0.37
TRIM28-215ENST00000601150 RALGAPA1Q6GYQ0 2036 aa17.33■□□□□ 0.37
TRIM28-215ENST00000601150 DCLK1O15075 740 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 MFAP3LO75121 409 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 RHOCP08134 193 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 HLA-EP13747 358 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 P2RY2P41231 377 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 AIF1P55008 147 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 SULT2A1Q06520 285 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 SCAPQ12770 1279 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 CAMK2GQ13555 558 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-215ENST00000601150 EFHC2Q5JST6 749 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 CCDC122Q5T0U0 273 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 ARTNQ5T4W7 220 aa17.33■□□□□ 0.36
TRIM28-215ENST00000601150 RNF219Q5W0B1 726 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-215ENST00000601150 ALKBH5Q6P6C2 394 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms