RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 FAM170AA1A519 330 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 TCAF2A6NFQ2 919 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 I6L893 689 aaPredicted RBP16.7■□□□□ 0.26
LSM4-206ENST00000600289 ADCY5O95622 1261 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 C7P10643 843 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 PDGFRAP16234 1089 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 CD70P32970 193 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 LMAN2Q12907 356 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 SLC12A1Q13621 1099 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 CDH18Q13634 790 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 TRIM14Q14142 442 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 CCDC14Q49A88 953 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 LAIR1Q6GTX8 287 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 FBXL22Q6P050 247 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 DNAJC24Q6P3W2 148 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 CHST9Q7L1S5 443 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 CCDC117Q8IWD4 279 aaPredicted RBP16.7■□□□□ 0.26
LSM4-206ENST00000600289 ZNF683Q8IZ20 524 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 CFAP52Q8N1V2 620 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 MDGA1Q8NFP4 955 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 TTC17Q96AE7 1141 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 HAPLN3Q96S86 360 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 ANLNQ9NQW6 1124 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 LUC7L2Q9Y383 392 aaKnown RBP16.7■□□□□ 0.26
LSM4-206ENST00000600289 STON1Q9Y6Q2 735 aa16.7■□□□□ 0.26
LSM4-206ENST00000600289 IGLV3-10A0A075B6K4 115 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 DDX3XO00571 662 aaKnown RBP eCLIP16.69■□□□□ 0.261e-52■■■■■ 70.2
LSM4-206ENST00000600289 RPP40O75818 363 aaKnown RBP16.69■□□□□ 0.26
LSM4-206ENST00000600289 SERPING1P05155 500 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 GPD1P21695 349 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 HNRNPH3P31942 346 aaKnown RBP16.69■□□□□ 0.26
LSM4-206ENST00000600289 RFC1P35251 1148 aaPredicted RBP16.69■□□□□ 0.26
LSM4-206ENST00000600289 IL12RB1P42701 662 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 PXNP49023 591 aaPredicted RBP16.69■□□□□ 0.26
LSM4-206ENST00000600289 OXCT1P55809 520 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 SIM2Q14190 667 aaPredicted RBP16.69■□□□□ 0.26
LSM4-206ENST00000600289 ZNF234Q14588 700 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 ARID5BQ14865 1188 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 MBLAC2Q68D91 279 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 SPECC1LQ69YQ0 1117 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 ANO7Q6IWH7 933 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 WDR59Q6PJI9 974 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 SARM1Q6SZW1 724 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 C11orf74Q86VG3 221 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 DRC7Q8IY82 874 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 CARNMT1Q8N4J0 409 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 KDM1BQ8NB78 822 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 ZC3H10Q96K80 434 aaKnown RBP16.69■□□□□ 0.26
LSM4-206ENST00000600289 CIPCQ9C0C6 399 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 ISCUQ9H1K1 167 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 CACNA2D2Q9NY47 1150 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 TAS2R14Q9NYV8 317 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 KIAA1522Q9P206 1035 aaPredicted RBP16.69■□□□□ 0.26
LSM4-206ENST00000600289 STIM2Q9P246 746 aa16.69■□□□□ 0.26
LSM4-206ENST00000600289 FLNBO75369 2602 aaKnown RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 TCRBV21S2A2A0A5A6 115 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 H0Y626 953 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 TM4SF5O14894 197 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 RTN2O75298 545 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 ASLP04424 464 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 ATP5BP06576 529 aaKnown RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 RETP07949 1114 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 DLDP09622 509 aaKnown RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 RRM1P23921 792 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 ZNF143P52747 638 aaPredicted RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 PLK1P53350 603 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 NRG1Q02297 640 aaPredicted RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 CSRP2Q16527 193 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 PTPRNQ16849 979 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 C15orf59Q2T9L4 293 aaPredicted RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 FUT11Q495W5 492 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 FSCBQ5H9T9 825 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 ARTNQ5T4W7 220 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 PLEKHA7Q6IQ23 1121 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 UNQ6494/PRO21346Q6UXR6 183 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 CCAR2Q8N163 923 aaKnown RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 KDF1Q8NAX2 398 aaPredicted RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 RNF214Q8ND24 703 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 IGSF8Q969P0 613 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 NTAN1Q96AB6 310 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 TRIM11Q96F44 468 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 RPRD1AQ96P16 312 aaPredicted RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 TMEM245Q9H330 911 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 PARVAQ9NVD7 372 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 INTS6Q9UL03 887 aaKnown RBP16.68■□□□□ 0.26
LSM4-206ENST00000600289 VANGL2Q9ULK5 521 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 THADAQ6YHU6 1953 aa16.68■□□□□ 0.26
LSM4-206ENST00000600289 NUP205Q92621 2012 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 ANKRD62A6NC57 917 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 DRGXA6NNA5 263 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 CLDN11O75508 207 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 GJB6O95452 261 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 MYBL1P10243 752 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 SKILP12757 684 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 GABRG2P18507 467 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 POLR2EP19388 210 aaKnown RBP16.67■□□□□ 0.26
LSM4-206ENST00000600289 CASP14P31944 242 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 WASP42768 502 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 CDH4P55283 916 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 HDAC4P56524 1084 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms