RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LMLNQ96KR4 655 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 RPL10LQ96L21 214 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 MRGPRX3Q96LB0 322 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 SPATA32Q96LK8 384 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 MIS12Q9H081 205 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 NUCKS1Q9H1E3 243 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PABPC3Q9H361 631 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 AASDHPPTQ9NRN7 309 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 SLCO3A1Q9UIG8 710 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 CA5BQ9Y2D0 317 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 HBS1LQ9Y450 684 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PCDHGB2Q9Y5G2 931 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 NBASA2RRP1 2371 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 A0A1B0GTQ1 180 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 RNF225M0QZC1 329 aaPredicted RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 ERVH48-1M5A8F1 160 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 O00370 1275 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 ENC1O14682 589 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 ACSL4O60488 711 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 GP1BBP13224 206 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 MAT2AP31153 395 aaKnown RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 TBX4P57082 545 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 TARDBPQ13148 414 aaKnown RBP eCLIP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 PNOCQ13519 176 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 CST6Q15828 149 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 NFIL3Q16649 462 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 TTC31Q49AM3 519 aaPredicted RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 KRBA2Q6ZNG9 492 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 APCDD1Q8J025 514 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 STK40Q8N2I9 435 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 GALNT15Q8N3T1 639 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 GUF1Q8N442 669 aaKnown RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 AADATQ8N5Z0 425 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 UBR7Q8N806 425 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 CNDP2Q96KP4 475 aaKnown RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 ACE2Q9BYF1 805 aaPredicted RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 UBXN6Q9BZV1 441 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 RSPH9Q9H1X1 276 aaPredicted RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 SGK2Q9HBY8 427 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 OLA1Q9NTK5 396 aaKnown RBP8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 HESX1Q9UBX0 185 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 STOML2Q9UJZ1 356 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 CFAP45Q9UL16 551 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 ZDHHC9Q9Y397 364 aa8.97□□□□□ -0.97
SHKBP1-220ENST00000599716 A0A1W2PPC4 97 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 M0QYV0 167 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 VILLO15195 856 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 SLC28A2O43868 658 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PCDHGA12O60330 932 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 SDC3O75056 442 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 LDOC1O95751 146 aaPredicted RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 IGLV3-27P01718 113 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 FYNP06241 537 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 ATP5BP06576 529 aaKnown RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 ITGAVP06756 1048 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 CENPBP07199 599 aaPredicted RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 EPB41P11171 864 aaKnown RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 MYF5P13349 255 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 JUPP14923 745 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 ABCB4P21439 1286 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 RPL13P26373 211 aaKnown RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 SLC8A1P32418 973 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 GTF2H1P32780 548 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PRCPP42785 496 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 SLC8A3P57103 927 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PITX1P78337 314 aaPredicted RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PKDCCQ504Y2 493 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 DCAF6Q58WW2 860 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PITRM1Q5JRX3 1037 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 C9orf64Q5T6V5 341 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 HES3Q5TGS1 186 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 ISM2Q6H9L7 571 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 TMEM270Q6UE05 265 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 GPR155Q7Z3F1 870 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 HSCBQ8IWL3 235 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PDCD7Q8N8D1 485 aaKnown RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 OR14C36Q8NHC7 312 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 WBP1Q96G27 269 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 FCRL2Q96LA5 508 aaPredicted RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 FAM129BQ96TA1 746 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 ELF4Q99607 663 aaPredicted RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 MYOCQ99972 504 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PCED1AQ9H1Q7 454 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 ABCC13Q9NSE7 274 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 ERVW-1Q9UQF0 538 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 NAALADL1Q9UQQ1 740 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 NCKAP1Q9Y2A7 1128 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 CEP83Q9Y592 693 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 PCDHB4Q9Y5E5 795 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 AK5Q9Y6K8 562 aa8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 TDRD6O60522 2096 aaKnown RBP8.96□□□□□ -0.98
SHKBP1-220ENST00000599716 A0A1W2PR77 199 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 FAM170AA1A519 330 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 CETN3O15182 167 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 RTN2O75298 545 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 IL1BP01584 269 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 LTFP02788 710 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 VDRP11473 427 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 KRT10P13645 584 aa8.95□□□□□ -0.98
SHKBP1-220ENST00000599716 C6P13671 934 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms