RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 COPB1P53618 953 aaKnown RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 POLR2FP61218 127 aaKnown RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 FMO1Q01740 532 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 MYL5Q02045 173 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 STX1AQ16623 288 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 HNRNPA1L2Q32P51 320 aaKnown RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 UAP1L1Q3KQV9 507 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 ARTNQ5T4W7 220 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 FAM102AQ5T9C2 384 aaPredicted RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 TTC39BQ5VTQ0 682 aaPredicted RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 DCAF12L1Q5VU92 463 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 NAA35Q5VZE5 725 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 BNIPLQ7Z465 357 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 C14orf80Q86SX3 495 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 DHX40Q8IX18 779 aaKnown RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 ZCCHC9Q8N567 271 aaKnown RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 MINDY1Q8N5J2 469 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 CADM4Q8NFZ8 388 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 CEP76Q8TAP6 659 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 NT5C3BQ969T7 300 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 PGAP3Q96FM1 320 aaPredicted RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 TBCBQ99426 244 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 GTPBP2Q9BX10 602 aaKnown RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 RSPH9Q9H1X1 276 aaPredicted RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 C6orf106Q9H6K1 298 aaPredicted RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 FBRSQ9HAH7 460 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 NLRC4Q9NPP4 1024 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 TMPRSS4Q9NRS4 437 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 ANO10Q9NW15 660 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 ARHGEF38Q9NXL2 777 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 TMEM63CQ9P1W3 806 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 KIAA1522Q9P206 1035 aaPredicted RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 SERGEFQ9UGK8 458 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 LIMA1Q9UHB6 759 aaKnown RBP13.47□□□□□ -0.25
LIG1-212ENST00000596549 VANGL2Q9ULK5 521 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 GON4LQ3T8J9 2241 aa13.47□□□□□ -0.25
LIG1-212ENST00000596549 LGALS16A8MUM7 142 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 METTL12A8MUP2 240 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 PAGE1O75459 146 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 GJB3O75712 270 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 ADCY5O95622 1261 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 LSM8O95777 96 aaKnown RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 CYP1A1P04798 512 aaPredicted RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 SRPRAP08240 638 aaKnown RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 SLC2A3P11169 496 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 PDGFRAP16234 1089 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 CHRNB2P17787 502 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 OXTRP30559 389 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 GRIK2Q13002 908 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 AUHQ13825 339 aaKnown RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 ARID5BQ14865 1188 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 SYCP1Q15431 976 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 C5orf22Q49AR2 442 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 CCDC183Q5T5S1 534 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 SH3PXD2AQ5TCZ1 1133 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 ZNF776Q68DI1 518 aaPredicted RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 SASS6Q6UVJ0 657 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 RABEPKQ7Z6M1 372 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 ERICH1Q86X53 443 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 ZNF683Q8IZ20 524 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 KDM1BQ8NB78 822 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 C1orf216Q8TAB5 229 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 RNF34Q969K3 372 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 C18orf8Q96DM3 657 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 ALG14Q96F25 216 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 RPL10LQ96L21 214 aaKnown RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 CNTNAP3BQ96NU0 1288 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 RPRD1AQ96P16 312 aaPredicted RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 NUP58Q9BVL2 599 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 CNTNAP3Q9BZ76 1288 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 PDCL3Q9H2J4 239 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 METTL5Q9NRN9 209 aaKnown RBP13.46□□□□□ -0.25
LIG1-212ENST00000596549 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.46□□□□□ -0.25
LIG1-212ENST00000596549 TMEM59LQ9UK28 342 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 STAP1Q9ULZ2 295 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 SNX10Q9Y5X0 201 aa13.46□□□□□ -0.25
LIG1-212ENST00000596549 GOLGA8SH3BPF8 625 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 ARHGAP33O14559 1287 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 MBD3O95983 291 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 DNTTP04053 509 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 VAV1P15498 845 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 CSRP1P21291 193 aaKnown RBP13.45□□□□□ -0.26
LIG1-212ENST00000596549 SOX5P35711 763 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 CXCR3P49682 368 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 SNX16P57768 344 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 RNASE9P60153 205 aaKnown RBP13.45□□□□□ -0.26
LIG1-212ENST00000596549 ST8SIA6P61647 398 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 ECT2LQ008S8 904 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 CDR2Q01850 454 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 BNC1Q01954 994 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 ZBTB16Q05516 673 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 GFPT1Q06210 699 aaPredicted RBP13.45□□□□□ -0.26
LIG1-212ENST00000596549 ZNF252P-AS1Q0IIN9 211 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 SEMA3BQ13214 749 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 ALFQ53S48 1182 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 WDR45BQ5MNZ6 344 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 BRMS1LQ5PSV4 323 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 RABGAP1LQ5R372 815 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 SYCP2LQ5T4T6 812 aa13.45□□□□□ -0.26
LIG1-212ENST00000596549 C9orf64Q5T6V5 341 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms