RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 DEF6Q9H4E7 631 aa12.27□□□□□ -0.45
LIG3-213ENST00000590630 CACNA2D2Q9NY47 1150 aa12.27□□□□□ -0.45
LIG3-213ENST00000590630 PLA2G4CQ9UP65 541 aa12.27□□□□□ -0.45
LIG3-213ENST00000590630 STON1Q9Y6Q2 735 aa12.27□□□□□ -0.45
LIG3-213ENST00000590630 CHD5Q8TDI0 1954 aa12.27□□□□□ -0.45
LIG3-213ENST00000590630 EP300Q09472 2414 aaPredicted RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 LAMA1P25391 3075 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 NYNRINQ9P2P1 1898 aaKnown RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 A0A1W2PQF6 199 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 DRGXA6NNA5 263 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 AKR1B15C9JRZ8 316 aaPredicted RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 E9PAM4 449 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 AXIN1O15169 862 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 ZBTB24O43167 697 aaPredicted RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 ASLP04424 464 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 PSMA2P25787 234 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 PXNP49023 591 aaPredicted RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 ZNF75DP51815 510 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 ADKP55263 362 aaKnown RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 CDH4P55283 916 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 OGDHQ02218 1023 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 ZNF177Q13360 481 aaPredicted RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 MAPK8IP2Q13387 824 aaPredicted RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 ZNF234Q14588 700 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 STARD3Q14849 445 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 RAB6CQ53S08 254 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 FSCBQ5H9T9 825 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 CCDC122Q5T0U0 273 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 ANO7Q6IWH7 933 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 CXorf57Q6NSI4 855 aaKnown RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 SERPINA13PQ6UXR4 307 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 C14orf80Q86SX3 495 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 DNAAF5Q86Y56 855 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 MDGA1Q8NFP4 955 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 SORCS1Q8WY21 1168 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 TTC17Q96AE7 1141 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 RAB6CQ9H0N0 254 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 OSBPL2Q9H1P3 480 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 EPC1Q9H2F5 836 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 RETREG1Q9H6L5 497 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 TMPRSS4Q9NRS4 437 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 PPARGC1AQ9UBK2 798 aaKnown RBP12.26□□□□□ -0.45
LIG3-213ENST00000590630 OR12D3Q9UGF7 316 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 NENFQ9UMX5 172 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 TBC1D30Q9Y2I9 924 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 GPR179Q6PRD1 2367 aa12.26□□□□□ -0.45
LIG3-213ENST00000590630 TCRBV21S2A2A0A5A6 115 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 AKR1B10O60218 316 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 SRGAP2O75044 1071 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 LMNAP02545 664 aaKnown RBP12.25□□□□□ -0.45
LIG3-213ENST00000590630 HOXC13P31276 330 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 CSKP41240 450 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 IL12RB1P42701 662 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 WASP42768 502 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 IRAK1P51617 712 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 PLK1P53350 603 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 GFPT1Q06210 699 aaPredicted RBP12.25□□□□□ -0.45
LIG3-213ENST00000590630 PTPRNQ16849 979 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 ASTE1Q2TB18 679 aaPredicted RBP12.25□□□□□ -0.45
LIG3-213ENST00000590630 PLEKHG6Q3KR16 790 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 FNDC3BQ53EP0 1204 aaKnown RBP12.25□□□□□ -0.45
LIG3-213ENST00000590630 PITRM1Q5JRX3 1037 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 EFHC2Q5JST6 749 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 SLFN11Q7Z7L1 901 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 SETD3Q86TU7 594 aaPredicted RBP12.25□□□□□ -0.45
LIG3-213ENST00000590630 CCDC185Q8N715 623 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 KDM1BQ8NB78 822 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 GAB3Q8WWW8 586 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 CCDC42Q96M95 316 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 NCAPGQ9BPX3 1015 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 ZYG11BQ9C0D3 744 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 THAP2Q9H0W7 228 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 TMEM245Q9H330 911 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 CD248Q9HCU0 757 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 BCCIPQ9P287 314 aaKnown RBP eCLIP12.25□□□□□ -0.45
LIG3-213ENST00000590630 MYO1AQ9UBC5 1043 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 INTS6Q9UL03 887 aaKnown RBP12.25□□□□□ -0.45
LIG3-213ENST00000590630 SNX10Q9Y5X0 201 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 SDK1Q7Z5N4 2213 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 GVINP1Q7Z2Y8 2422 aa12.25□□□□□ -0.45
LIG3-213ENST00000590630 WASH3PC4AMC7 463 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 HRO43593 1189 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 SYNCRIPO60506 623 aaKnown RBP12.24□□□□□ -0.45
LIG3-213ENST00000590630 RPP40O75818 363 aaKnown RBP12.24□□□□□ -0.45
LIG3-213ENST00000590630 RNF8O76064 485 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 CNTN5O94779 1100 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 CYP1A2P05177 515 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 PTPRZ1P23471 2315 aaPredicted RBP12.24□□□□□ -0.45
LIG3-213ENST00000590630 OR1E1P30953 314 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 GALCP54803 685 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 ST8SIA6P61647 398 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 ECT2LQ008S8 904 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 SULT2A1Q06520 285 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 ZNF252P-AS1Q0IIN9 211 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 ACAP1Q15027 740 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 ALFQ53S48 1182 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 ARTNQ5T4W7 220 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 C6orf118Q5T5N4 469 aa12.24□□□□□ -0.45
LIG3-213ENST00000590630 MANEALQ5VSG8 457 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms