RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KDM1BQ8NB78 822 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 WFDC5Q8TCV5 224 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 RXFP2Q8WXD0 754 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 SORCS1Q8WY21 1168 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 MYEOVQ96EZ4 313 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 LMLNQ96KR4 655 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 CFAP57Q96MR6 1250 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 HAPLN3Q96S86 360 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 TTYH3Q9C0H2 523 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 DUSP15Q9H1R2 295 aaPredicted RBP13.82□□□□□ -0.2
CLK3-216ENST00000564468 VANGL2Q9ULK5 521 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 RAD54BQ9Y620 910 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 BZW2Q9Y6E2 419 aaKnown RBP13.82□□□□□ -0.2
CLK3-216ENST00000564468 CFAP47Q6ZTR5 3102 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 MUC22E2RYF6 1773 aaPredicted RBP13.81□□□□□ -0.2
CLK3-216ENST00000564468 C2CD4BA6NLJ0 364 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 ADCY5O95622 1261 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 SRPRAP08240 638 aaKnown RBP13.81□□□□□ -0.2
CLK3-216ENST00000564468 ADRB1P08588 477 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 GZMAP12544 262 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 NDUFV2P19404 249 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 TFE3P19532 575 aaPredicted RBP13.81□□□□□ -0.2
CLK3-216ENST00000564468 GPD1P21695 349 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 PBX1P40424 430 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 CSKP41240 450 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 CDH4P55283 916 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 ATP11AP98196 1134 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 NFKBIBQ15653 356 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 FUT11Q495W5 492 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 C5orf22Q49AR2 442 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 PITRM1Q5JRX3 1037 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 RNF219Q5W0B1 726 aaPredicted RBP13.81□□□□□ -0.2
CLK3-216ENST00000564468 PMS2CLQ68D20 193 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 LPCAT2Q7L5N7 544 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 BNIPLQ7Z465 357 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 METTL3Q86U44 580 aaKnown RBP13.81□□□□□ -0.2
CLK3-216ENST00000564468 VPS36Q86VN1 386 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 MCOLN2Q8IZK6 566 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 EMC1Q8N766 993 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 CYB5D2Q8WUJ1 264 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 SYN2Q92777 582 aaPredicted RBP13.81□□□□□ -0.2
CLK3-216ENST00000564468 MRGPRX1Q96LB2 322 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 TMEM245Q9H330 911 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 HAUS4Q9H6D7 363 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 PRDM16Q9HAZ2 1276 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 CD248Q9HCU0 757 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 IFNKQ9P0W0 207 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 CALCOCO1Q9P1Z2 691 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 INVSQ9Y283 1065 aa13.81□□□□□ -0.2
CLK3-216ENST00000564468 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.81□□□□□ -0.22e-9■□□□□ 8.2
CLK3-216ENST00000564468 TNRC6BQ9UPQ9 1833 aaKnown RBP13.8□□□□□ -0.2
CLK3-216ENST00000564468 NYNRINQ9P2P1 1898 aaKnown RBP13.8□□□□□ -0.2
CLK3-216ENST00000564468 ZFHX4Q86UP3 3567 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 DCLK1O15075 740 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 AP5Z1O43299 807 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 ACADMP11310 421 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 PRKCHP24723 683 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 DPP6P42658 865 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 PLK1P53350 603 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 ZBED6P86452 979 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 ECT2LQ008S8 904 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 SPEM2Q0P670 501 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 CAMK2GQ13555 558 aaPredicted RBP13.8□□□□□ -0.2
CLK3-216ENST00000564468 CSRP2Q16527 193 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 CDO1Q16878 200 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 MAP7D1Q3KQU3 841 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 PLEKHG6Q3KR16 790 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 CCDC14Q49A88 953 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 FSCBQ5H9T9 825 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 TRNP1Q6NT89 227 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 DCUN1D2Q6PH85 259 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 KIAA1324Q6UXG2 1013 aaKnown RBP13.8□□□□□ -0.2
CLK3-216ENST00000564468 PHLDB2Q86SQ0 1253 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 FAM131BQ86XD5 332 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 TMPRSS6Q8IU80 811 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 OR2T3Q8NH03 318 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 JOSD2Q8TAC2 188 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 NETO1Q8TDF5 533 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 RLN3Q8WXF3 142 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 PRCCQ92733 491 aaPredicted RBP13.8□□□□□ -0.2
CLK3-216ENST00000564468 IGSF8Q969P0 613 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 TRIM11Q96F44 468 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 SIPA1Q96FS4 1042 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 SYT11Q9BT88 431 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 ADAM33Q9BZ11 813 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 RETREG1Q9H6L5 497 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 CAPN11Q9UMQ6 739 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 LUC7L2Q9Y383 392 aaKnown RBP13.8□□□□□ -0.2
CLK3-216ENST00000564468 CHD6Q8TD26 2715 aa13.8□□□□□ -0.2
CLK3-216ENST00000564468 DRGXA6NNA5 263 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 OXTRP30559 389 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 RFC1P35251 1148 aaPredicted RBP13.79□□□□□ -0.2
CLK3-216ENST00000564468 SFSWAPQ12872 951 aaKnown RBP13.79□□□□□ -0.2
CLK3-216ENST00000564468 PTPRNQ16849 979 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 TDRD12Q587J7 1177 aaKnown RBP13.79□□□□□ -0.2
CLK3-216ENST00000564468 WDR59Q6PJI9 974 aa13.79□□□□□ -0.2
CLK3-216ENST00000564468 ZNF571Q7Z3V5 609 aaPredicted RBP13.79□□□□□ -0.2
CLK3-216ENST00000564468 SETD3Q86TU7 594 aaPredicted RBP13.79□□□□□ -0.2
CLK3-216ENST00000564468 CENPIQ92674 756 aaPredicted RBP13.79□□□□□ -0.2
CLK3-216ENST00000564468 ARRDC1-AS1Q9H2J1 176 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms