RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 INO80CQ6PI98 192 aaPredicted RBP7.6□□□□□ -1.19
VPS4A-203ENST00000564399 FOXR1Q6PIV2 292 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 UNC13DQ70J99 1090 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 PIGZQ86VD9 579 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 IQCHQ86VS3 1027 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 STK40Q8N2I9 435 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 SLC25A45Q8N413 288 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 AADATQ8N5Z0 425 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 ZNF557Q8N988 423 aaPredicted RBP7.6□□□□□ -1.19
VPS4A-203ENST00000564399 OR4C6Q8NH72 309 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 GOLGA5Q8TBA6 731 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 EDEM1Q92611 657 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 TTC17Q96AE7 1141 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 DHX58Q96C10 678 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 CCDC97Q96F63 343 aaPredicted RBP7.6□□□□□ -1.19
VPS4A-203ENST00000564399 KLHDC7BQ96G42 594 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 MYO19Q96H55 970 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 ULBP1Q9BZM6 244 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 CUEDC2Q9H467 287 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 ASCL3Q9NQ33 180 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 STOML2Q9UJZ1 356 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 ERVW-1Q9UQF0 538 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 RP1L1Q8IWN7 2480 aaPredicted RBP7.6□□□□□ -1.19
VPS4A-203ENST00000564399 UNC13CQ8NB66 2214 aa7.6□□□□□ -1.19
VPS4A-203ENST00000564399 LATO43561 262 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 MOCS3O95396 460 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 NTRK1P04629 796 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 PRR29P0C7W0 189 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 ALPPL2P10696 532 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CKMT1AP12532 417 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 MYF5P13349 255 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 DGKAP23743 735 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CASP1P29466 404 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 NUDT1P36639 197 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CTSOP43234 321 aaPredicted RBP7.59□□□□□ -1.19
VPS4A-203ENST00000564399 SLC11A2P49281 568 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 DUSP3P51452 185 aaPredicted RBP7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CDH18Q13634 790 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 SLC39A14Q15043 492 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 RAB41Q5JT25 222 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 MPP7Q5T2T1 576 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CEP135Q66GS9 1140 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 ATG14Q6ZNE5 492 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CARNMT1Q8N4J0 409 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 PIP4P2Q8N4L2 257 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 IQUBQ8NA54 791 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 HJURPQ8NCD3 748 aaPredicted RBP7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CCDC150Q8NCX0 1101 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 FIBINQ8TAL6 211 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 MAPK15Q8TD08 544 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 TMC2Q8TDI7 906 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 MRGPRX3Q96LB0 322 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 IPO9Q96P70 1041 aaKnown RBP7.59□□□□□ -1.19
VPS4A-203ENST00000564399 FAM129BQ96TA1 746 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 MYOCQ99972 504 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 C7orf25Q9BPX7 421 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 ARHGAP9Q9BRR9 750 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 UBXN6Q9BZV1 441 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 NIF3L1Q9GZT8 377 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 BLZF1Q9H2G9 400 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 LRRC4Q9HBW1 653 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 APOBEC3GQ9HC16 384 aaKnown RBP7.59□□□□□ -1.19
VPS4A-203ENST00000564399 EVA1BQ9NVM1 165 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 UCKL1Q9NWZ5 548 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CYTH4Q9UIA0 394 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 SLCO3A1Q9UIG8 710 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 INTS6Q9UL03 887 aaKnown RBP7.59□□□□□ -1.19
VPS4A-203ENST00000564399 SATB2Q9UPW6 733 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 DMTF1Q9Y222 760 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 CA5BQ9Y2D0 317 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 FLNCQ14315 2725 aa7.59□□□□□ -1.19
VPS4A-203ENST00000564399 COL12A1Q99715 3063 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 TEX15Q9BXT5 2789 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 PRAMEF26H0Y7S4 382 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 IKBKBO14920 756 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 IRAK2O43187 625 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ACSL4O60488 711 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 RTN2O75298 545 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 CD2BP2O95400 341 aaKnown RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 CENPBP07199 599 aaPredicted RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 GP1BAP07359 652 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 SRPRAP08240 638 aaKnown RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 THEGLP0DJG4 465 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 PDCP20941 246 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 MZF1P28698 734 aaPredicted RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 SLC6A4P31645 630 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 NNMTP40261 264 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 GCLMP48507 274 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 NFKB2Q00653 900 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ECT2LQ008S8 904 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ARID5BQ14865 1188 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 STK38Q15208 465 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 E2F4Q16254 413 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 ISXQ2M1V0 245 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 SETMARQ53H47 684 aaPredicted RBP7.58□□□□□ -1.2
VPS4A-203ENST00000564399 PITRM1Q5JRX3 1037 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 BSPRYQ5W0U4 402 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 NUGGCQ68CJ6 796 aa7.58□□□□□ -1.2
VPS4A-203ENST00000564399 PM20D1Q6GTS8 502 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms