RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 CHTOPQ9Y3Y2 248 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 CCDC171Q6TFL3 1326 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 MROH5Q6ZUA9 1318 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 TTC21BQ7Z4L5 1316 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 hCG_1642624A0A1W2PR95 340 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 TCRBV7S2A1N4TA0A589 114 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 LRRD1A4D1F6 860 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 LRRIQ4A6NIV6 560 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 STMND1H3BQB6 276 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 STX16-NPEPL1H3BU86 382 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 H7C0S8 307 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 KIAA0391O15091 583 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 TXNL1O43396 289 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 HTRA2O43464 458 aaPredicted RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 FRS3O43559 492 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CBFA2T3O75081 653 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 OR5F1O95221 314 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 DDX58O95786 925 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 GPANK1O95872 356 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 RPLP2P05387 115 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 UBL4AP11441 157 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 AKR1B1P15121 316 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 HPGDP15428 266 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CDH3P22223 829 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 FGFR4P22455 802 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 SLC6A2P23975 617 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 DNAJB1P25685 340 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CTNNA2P26232 953 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 U2AF2P26368 475 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS35-205ENST00000563984 EVI2BP34910 448 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 TRIM23P36406 574 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 GPC3P51654 580 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 TKTL1P51854 596 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 ROR2Q01974 943 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 CDC16Q13042 620 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 SGCGQ13326 291 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 DYNC1I2Q13409 638 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 TP53BP2Q13625 1128 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 PRKG1Q13976 671 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 PCBP2Q15366 365 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS35-205ENST00000563984 MMEL1Q495T6 779 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CFAP157Q5JU67 520 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 KCNT1Q5JUK3 1230 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 SLC30A9Q6PML9 568 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CCDC149Q6ZUS6 474 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 GALNT7Q86SF2 657 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 P3H2Q8IVL5 708 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 NKAIN4Q8IVV8 208 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CMTR2Q8IYT2 770 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 CEP70Q8NHQ1 597 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 LINC00476Q8WZB0 136 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 FAM149B1Q96BN6 582 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 COA7Q96BR5 231 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 TMX3Q96JJ7 454 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 ZC3H10Q96K80 434 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 MED15Q96RN5 788 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 NUDCD1Q96RS6 583 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 PIGSQ96S52 555 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 PNKPQ96T60 521 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 ZSWIM1Q9BR11 485 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CHCHD6Q9BRQ6 235 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 KIFC3Q9BVG8 833 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 ALOXE3Q9BYJ1 711 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 GALNT9Q9HCQ5 603 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 UBN1Q9NPG3 1134 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 IARS2Q9NSE4 1012 aaKnown RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 NSMCE4AQ9NXX6 385 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 EXTL2Q9UBQ6 330 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 CHORDC1Q9UHD1 332 aaPredicted RBP5.35□□□□□ -1.55
VPS35-205ENST00000563984 KCNE5Q9UJ90 142 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 MOSPD1Q9UJG1 213 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 KIAA1257Q9ULG3 409 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 PCDHA13Q9Y5I0 950 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 AP1M2Q9Y6Q5 423 aa5.35□□□□□ -1.55
VPS35-205ENST00000563984 RPAP1Q9BWH6 1393 aaPredicted RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 TNKSO95271 1327 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CAPN9O14815 690 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 HAT1O14929 419 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 PMM2O15305 246 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 IDH3BO43837 385 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CTNND1O60716 968 aaKnown RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 PRSS23O95084 383 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 GOSR1O95249 250 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 TRIM16O95361 564 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 LMNAP02545 664 aaKnown RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 HDCP19113 662 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 JAK1P23458 1154 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CCND1P24385 295 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 ADRA1BP35368 520 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 PLCD1P51178 756 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 ADKP55263 362 aaKnown RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 CXADRP78310 365 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 KIF23Q02241 960 aaPredicted RBP5.34□□□□□ -1.55
VPS35-205ENST00000563984 SPAG1Q07617 926 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 DDR1Q08345 913 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 HSPA14Q0VDF9 509 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 TARDBPQ13148 414 aaKnown RBP eCLIP5.34□□□□□ -1.55
VPS35-205ENST00000563984 TRPC3Q13507 836 aa5.34□□□□□ -1.55
VPS35-205ENST00000563984 CUL2Q13617 745 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms