RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ARHGAP26Q9UNA1 814 aa10.59□□□□□ -0.71
USP3-219ENST00000561326 MRPS23Q9Y3D9 190 aaKnown RBP10.59□□□□□ -0.71
USP3-219ENST00000561326 NEU2Q9Y3R4 380 aa10.59□□□□□ -0.71
USP3-219ENST00000561326 NUP210Q8TEM1 1887 aaPredicted RBP10.59□□□□□ -0.71
USP3-219ENST00000561326 NYNRINQ9P2P1 1898 aaKnown RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 E2F8A0AVK6 867 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 ESYT3A0FGR9 886 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 C5orf60A6NFR6 353 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 ZSCAN5CA6NGD5 496 aaPredicted RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 EPOPA6NHQ4 379 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 ARHGAP42A6NI28 874 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 CLDN11O75508 207 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 GCATO75600 419 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 PAPLNO95428 1278 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 KLKB1P03952 638 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 GJA1P17302 382 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 HOXB8P17481 243 aaPredicted RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 CCNCP24863 283 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 RBL1P28749 1068 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 OR1E1P30953 314 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 GGCXP38435 758 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 GARSP41250 739 aaKnown RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 RPL21P46778 160 aaKnown RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 MAPKAPK2P49137 400 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 VPS41P49754 854 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 CLCN6P51797 869 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 PLTPP55058 493 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 CDH4P55283 916 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 YBEYP58557 167 aaPredicted RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 PPIDQ08752 370 aaKnown RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 GALNT2Q10471 571 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 ZNF177Q13360 481 aaPredicted RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 PRKD1Q15139 912 aaPredicted RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 TEAD2Q15562 447 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 P3H1Q32P28 736 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 TIGD7Q6NT04 549 aaPredicted RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 FBXO38Q6PIJ6 1188 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 TMC5Q6UXY8 1006 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 CHRDL2Q6WN34 429 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 HTR3DQ70Z44 454 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 ZNF683Q8IZ20 524 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 UMODL1-AS1Q8N2C9 162 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 EFHBQ8N7U6 833 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 HDAC11Q96DB2 347 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 RTP4Q96DX8 246 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 TMA16Q96EY4 203 aaKnown RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 TSGA13Q96PP4 275 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 VAT1Q99536 393 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 FOXP3Q9BZS1 431 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 TDP1Q9NUW8 608 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 MPP6Q9NZW5 540 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 CFAP97Q9P2B7 532 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 STOML2Q9UJZ1 356 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 TRHDEQ9UKU6 1024 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 TPX2Q9ULW0 747 aaKnown RBP10.58□□□□□ -0.72
USP3-219ENST00000561326 MFHAS1Q9Y4C4 1052 aa10.58□□□□□ -0.72
USP3-219ENST00000561326 PRRC2BQ5JSZ5 2229 aaKnown RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 MIA3Q5JRA6 1907 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 TMEM265A0A087WTH1 108 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 GOLGA6L7A0A1B0GV03 622 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 DFFAO00273 331 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 RFXAPO00287 272 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 LEFTY2O00292 366 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 NEBLO76041 1014 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 SEC31AO94979 1220 aaKnown RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 MAP3K6O95382 1288 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 RPL22P35268 128 aaKnown RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 ETFBP38117 255 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 CCR2P41597 374 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 KCNC3Q14003 757 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 POLD3Q15054 466 aaPredicted RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 ANO4Q32M45 955 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 LRIT3Q3SXY7 679 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 PARP15Q460N3 678 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 FAM133BQ5BKY9 247 aaKnown RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 IZUMO3Q5VZ72 239 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 NADSYN1Q6IA69 706 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 RFWD3Q6PCD5 774 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 ARHGEF18Q6ZSZ5 1173 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 CHST9Q7L1S5 443 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 HDXQ7Z353 690 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 NLRP14Q86W24 1093 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 CCDC13Q8IYE1 715 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 ATPAF2Q8N5M1 289 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 HJURPQ8NCD3 748 aaPredicted RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 TTC16Q8NEE8 873 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 VN1R2Q8NFZ6 395 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 NSMCE1Q8WV22 266 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 ART4Q93070 314 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 IGSF8Q969P0 613 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 ZNF707Q96C28 371 aaPredicted RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 TCEAL4Q96EI5 215 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 ZFRQ96KR1 1074 aaKnown RBP10.57□□□□□ -0.72
USP3-219ENST00000561326 FMO2Q99518 471 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 LGMNQ99538 433 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 SLC39A8Q9C0K1 460 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 KLC2Q9H0B6 622 aa10.57□□□□□ -0.72
USP3-219ENST00000561326 MAGEH1Q9H213 219 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms