RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 WDR66Q8TBY9 1149 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 TBCKQ8TEA7 893 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 SMCR8Q8TEV9 937 aaPredicted RBP2.66□□□□□ -1.98
SPG11-223ENST00000560858 IPO4Q8TEX9 1081 aaKnown RBP2.66□□□□□ -1.98
SPG11-223ENST00000560858 RIN2Q8WYP3 895 aaPredicted RBP2.66□□□□□ -1.98
SPG11-223ENST00000560858 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.66□□□□□ -1.98
SPG11-223ENST00000560858 RAD54LQ92698 747 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 DNAJC19Q96DA6 116 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 RRP36Q96EU6 259 aaKnown RBP2.66□□□□□ -1.98
SPG11-223ENST00000560858 CALML4Q96GE6 196 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 CAPZA3Q96KX2 299 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 CCDC42Q96M95 316 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 DEPDC7Q96QD5 511 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 TMEM47Q9BQJ4 181 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 LRRC1Q9BTT6 524 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 RTFDC1Q9BY42 306 aaPredicted RBP2.66□□□□□ -1.98
SPG11-223ENST00000560858 NYXQ9GZU5 481 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 ANKRD2Q9GZV1 360 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 NDST4Q9H3R1 872 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 MLXIPQ9HAP2 919 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 BCO1Q9HAY6 547 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 C6orf50Q9HD87 102 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 RIC8AQ9NPQ8 531 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 RSPH14Q9UHP6 348 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 GGA2Q9UJY4 613 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 PCDHA13Q9Y5I0 950 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 CACNA1IQ9P0X4 2223 aa2.66□□□□□ -1.98
SPG11-223ENST00000560858 BRWD3Q6RI45 1802 aa2.65□□□□□ -1.98
SPG11-223ENST00000560858 GPR75-ASB3A0A0A6YYF3 556 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SHTN1A0MZ66 631 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 GTPBP10A4D1E9 387 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 C5orf60A6NFR6 353 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ZNF233A6NK53 670 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 HMGB1P1B2RPK0 211 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 PES1O00541 588 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 EBAG9O00559 213 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 NCK2O43639 380 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLC37A4O43826 429 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 AKR1B10O60218 316 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 HSF2BPO75031 334 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 DNAJC8O75937 253 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 GFPT2O94808 682 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 HEXIM1O94992 359 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 TDP2O95551 362 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 GNA14O95837 355 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TTLL1O95922 423 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 F2P00734 622 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 LDHCP07864 332 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CHRM2P08172 466 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TSPY3P0CV98 308 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TSPY8P0CW00 308 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 PDHBP11177 359 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ALAS1P13196 640 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 NR1D1P20393 614 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLC6A2P23975 617 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 KLRC1P26715 233 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TM4SF1P30408 202 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ADSLP30566 484 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 PAFAH1B1P43034 410 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 MAGEA1P43355 309 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CCT5P48643 541 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 FNTAP49354 379 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 KPNA1P52294 538 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 HSPA2P54652 639 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 NAP1L1P55209 391 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 PER3P56645 1201 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 RHBDL3P58872 404 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 RPS8P62241 208 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 GNGT1P63211 74 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TNNC1P63316 161 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 GSTO1P78417 241 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 FKBP3Q00688 224 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 TFAP4Q01664 338 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 GABPAQ06546 454 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 HYAL1Q12794 435 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ITGB3BPQ13352 177 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 DRP2Q13474 957 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 PDIA5Q14554 519 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 NAB2Q15742 525 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SLC18A3Q16572 532 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 CALCRLQ16602 461 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TMEM266Q2M3C6 531 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 MST1LQ2TV78 715 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 LETM2Q2VYF4 491 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 SUPT20HL1Q3ZLR7 823 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TDRD12Q587J7 1177 aaKnown RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 SPDYCQ5MJ68 293 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 C10orf76Q5T2E6 689 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 NAA35Q5VZE5 725 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TBC1D9BQ66K14 1250 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 PPP4R3AQ6IN85 833 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 KRTAP5-4Q6L8H1 288 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 ZNF529Q6P280 563 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 MOXD1Q6UVY6 613 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP2.65□□□□□ -1.99
SPG11-223ENST00000560858 MMS22LQ6ZRQ5 1243 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 TSHZ1Q6ZSZ6 1077 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 FRMD7Q6ZUT3 714 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 USP43Q70EL4 1123 aa2.65□□□□□ -1.99
SPG11-223ENST00000560858 MEPCEQ7L2J0 689 aaKnown RBP2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms