RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 PIF1Q9H611 641 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 RNPEPL1Q9HAU8 725 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 IQGAP3Q86VI3 1631 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 A0A087X1B8 175 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 WDR27A2RRH5 827 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 EFCAB10A6NFE3 127 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PSMD12O00232 456 aaPredicted RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ALOX12P18054 663 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 WARSP23381 471 aaKnown RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 RPL14P50914 215 aaKnown RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 FAAP100Q0VG06 881 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 SREBF2Q12772 1141 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 NTRK3Q16288 839 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ITIH5Q86UX2 942 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 STK40Q8N2I9 435 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 CCDC3Q9BQI4 270 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 AGXT2Q9BYV1 514 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 NUAK2Q9H093 628 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 MYLK2Q9H1R3 596 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ENTPD7Q9NQZ7 604 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ANAPC2Q9UJX6 822 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PSMG1O95456 288 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 STAU1O95793 577 aaKnown RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 TSPAN19P0C672 248 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 TSHRP16473 764 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 GTF2A2P52657 109 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ADARP55265 1226 aaKnown RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 FCGRTP55899 365 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 TBX4P57082 545 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 POU5F2Q8N7G0 328 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 REEP1Q9H902 201 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 BTBD3Q9Y2F9 522 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PTGES3LE9PB15 166 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PROCP04070 461 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 RPN2P04844 631 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ATP6V1C1P21283 382 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 RAB27AP51159 221 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PDIA6Q15084 440 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 MEA1Q16626 185 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 NIPA1Q7RTP0 329 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PLEKHH3Q7Z736 793 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 KATNAL2Q8IYT4 538 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PCSK9Q8NBP7 692 aaKnown RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 KIAA0895Q8NCT3 520 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PROX1Q92786 737 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 QRFPRQ96P65 431 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ADI1Q9BV57 179 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 SPON1Q9HCB6 807 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 DDX18Q9NVP1 670 aaKnown RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 CCDC167Q9P0B6 97 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 TMEM216Q9P0N5 145 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 TBKBP1A7MCY6 615 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 DDX3XO00571 662 aaKnown RBP eCLIP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 GUCY1B2O75343 617 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 CCNA2P20248 432 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 RAP1GAPP47736 663 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 RARRES1P49788 294 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 ALDH5A1P51649 535 aaPredicted RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 LAMTOR4Q0VGL1 99 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 KLHL17Q6TDP4 642 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 FAM180AQ6UWF9 173 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 CRELD2Q6UXH1 353 aaPredicted RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 C8orf59Q8N0T1 100 aaPredicted RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PRCCQ92733 491 aaPredicted RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 MCRS1Q96EZ8 462 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 RIBC2Q9H4K1 309 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PXMP2Q9NR77 195 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 DDX43Q9NXZ2 648 aaKnown RBP13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 CDH9Q9ULB4 789 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 PCDHB5Q9Y5E4 795 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 NCOA3Q9Y6Q9 1424 aa13.45□□□□□ -0.26
CSPG4P11-201ENST00000560634 A0A087WZ62 844 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 ENDOD1O94919 500 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 HMGCRP04035 888 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 LBPP18428 481 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 PBLDP30039 288 aaPredicted RBP13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 ALDH9A1P49189 494 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 NDST1P52848 882 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 SKP1P63208 163 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 TBX2Q13207 712 aaPredicted RBP13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 B3GNT6Q6ZMB0 384 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 AMER2Q8N7J2 671 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 PIWIL2Q8TC59 973 aaKnown RBP13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 CKAP2Q8WWK9 683 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 FDXACB1Q9BRP7 624 aaPredicted RBP13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 SNX8Q9Y5X2 465 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 CD163L1Q9NR16 1453 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 PARNO95453 639 aaKnown RBP13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 CXCL8P10145 99 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 VAV1P15498 845 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 ACSM2AQ08AH3 577 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 PARP6Q2NL67 630 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 ACSM2BQ68CK6 577 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 OVOS1Q6IE37 1185 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 SYTL5Q8TDW5 730 aaPredicted RBP13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 NACC2Q96BF6 587 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 MRPL39Q9NYK5 338 aaKnown RBP13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 TRIM43BA6NCK2 446 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 CBX6O95503 412 aa13.44□□□□□ -0.26
CSPG4P11-201ENST00000560634 HOXC6P09630 235 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms