RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GNG11P61952 73 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 RPS24P62847 133 aaKnown RBP9.5□□□□□ -0.89
LDLR-210ENST00000559340 TNK2Q07912 1038 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 GRSF1Q12849 480 aaKnown RBP eCLIP9.5□□□□□ -0.89
LDLR-210ENST00000559340 SEMA3BQ13214 749 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 MLF2Q15773 248 aaPredicted RBP9.5□□□□□ -0.89
LDLR-210ENST00000559340 SEL1L2Q5TEA6 688 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 MEI1Q5TIA1 1274 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 MANEALQ5VSG8 457 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 DAB2IPQ5VWQ8 1189 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 FYB2Q5VWT5 728 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 RFX8Q6ZV50 586 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 C14orf80Q86SX3 495 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 CCDC50Q8IVM0 306 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 CFAP52Q8N1V2 620 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 RTL3Q8N8U3 475 aaKnown RBP9.5□□□□□ -0.89
LDLR-210ENST00000559340 ATRIPQ8WXE1 791 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 CD101Q93033 1021 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 IGSF8Q969P0 613 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 ASIC4Q96FT7 647 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 HES6Q96HZ4 224 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 P2RY13Q9BPV8 354 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 ANLNQ9NQW6 1124 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 TMPRSS4Q9NRS4 437 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 DNAJC17Q9NVM6 304 aaKnown RBP9.5□□□□□ -0.89
LDLR-210ENST00000559340 TMEM248Q9NWD8 314 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 CWC15Q9P013 229 aaKnown RBP9.5□□□□□ -0.89
LDLR-210ENST00000559340 FBXO10Q9UK96 956 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 HPCAL4Q9UM19 191 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 EFR3BQ9Y2G0 817 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 SLC27A6Q9Y2P4 619 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 HYOU1Q9Y4L1 999 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 SNX10Q9Y5X0 201 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 PIAS3Q9Y6X2 628 aa9.5□□□□□ -0.89
LDLR-210ENST00000559340 C5orf42Q9H799 3197 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ILVBLA1L0T0 632 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ARHGAP42A6NI28 874 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 SPECC1L-ADORA2AF8WAN1 911 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 FAM72CH0Y354 149 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 I6L893 689 aaPredicted RBP9.49□□□□□ -0.89
LDLR-210ENST00000559340 NARSO43776 548 aaKnown RBP9.49□□□□□ -0.89
LDLR-210ENST00000559340 TULP3O75386 442 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 TCF4P15884 667 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 GOT1P17174 413 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ERCC2P18074 760 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 DRD1P21728 446 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 HOXD9P28356 352 aaPredicted RBP9.49□□□□□ -0.89
LDLR-210ENST00000559340 CTHP32929 405 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 GRIA2P42262 883 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 TNFRSF4P43489 277 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 PEX5P50542 639 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ARSEP51690 589 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 NDST2P52849 883 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ZXDAP98168 799 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 SULT2A1Q06520 285 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 DPYSL3Q14195 570 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 PPP2R5EQ16537 467 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 CA9Q16790 459 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ATP13A4Q4VNC1 1196 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ANKRD20A8PQ5CZ79 823 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 TFDP3Q5H9I0 405 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 FAM72AQ5TYM5 149 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 RNF43Q68DV7 783 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 TXNRD3NBQ6F5E7 133 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 FAM72DQ6L9T8 149 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 TMCO3Q6UWJ1 677 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ZNF852Q6ZMS4 543 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 SPOCD1Q6ZMY3 1216 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 CYP4V2Q6ZWL3 525 aaPredicted RBP9.49□□□□□ -0.89
LDLR-210ENST00000559340 FAM72BQ86X60 149 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 RFX6Q8HWS3 928 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 LRRC49Q8IUZ0 686 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ZNF683Q8IZ20 524 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 AHI1Q8N157 1196 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 PYROXD2Q8N2H3 581 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 SLC35F6Q8N357 371 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 NAT16Q8N8M0 369 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 MAIP1Q8WWC4 291 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 FAM3CQ92520 227 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 BHMTQ93088 406 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 RNF25Q96BH1 459 aaPredicted RBP9.49□□□□□ -0.89
LDLR-210ENST00000559340 PBKQ96KB5 322 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 CSPG4P5Q96PW8 444 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 RNF157Q96PX1 679 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 MAGEH1Q9H213 219 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 GOLPH3Q9H4A6 298 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 ARHGEF4Q9NR80 690 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 PLK2Q9NYY3 685 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 MPP6Q9NZW5 540 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 TBC1D30Q9Y2I9 924 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 RAD54BQ9Y620 910 aa9.49□□□□□ -0.89
LDLR-210ENST00000559340 COL4A2P08572 1712 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 CTAGE9A4FU28 777 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 TBC1D3BA6NDS4 549 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 STK25O00506 426 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 APOL1O14791 398 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 NPC1O15118 1278 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 RAMP2O60895 175 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 ZNF189O75820 626 aaPredicted RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 CNTN5O94779 1100 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms