RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MAGEB16A2A368 324 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 WDR27A2RRH5 827 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MANSC4A6NHS7 340 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 VGLL3A8MV65 326 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SNNO75324 88 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CBX6O95503 412 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 AP2A1O95782 977 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 THP07101 528 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MYL2P10916 166 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ESRRAP11474 423 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 AKR1A1P14550 325 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PSMB4P28070 264 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 HTR7P34969 479 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ADRA1BP35368 520 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 GP5P40197 560 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 RAB27AP51159 221 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MAP3K7CLP57077 242 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 OCRLQ01968 901 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ZNF33AQ06730 810 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PPIDQ08752 370 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 BST1Q10588 318 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 WASHC5Q12768 1159 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 NME3Q13232 169 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 STX3Q13277 289 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 BMPR2Q13873 1038 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 TEX44Q53QW1 395 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PLEKHG4Q58EX7 1191 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 RAB41Q5JT25 222 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PRAMEF19Q5SWL8 479 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ZNF618Q5T7W0 954 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 GRTP1Q5TC63 336 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MROH9Q5TGP6 573 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 TRMT10BQ6PF06 316 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 DSTYKQ6XUX3 929 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 RASSF3Q86WH2 238 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 WDR75Q8IWA0 830 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PYROXD2Q8N2H3 581 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SLC7A14Q8TBB6 771 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CLP1Q92989 425 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 UTP4Q969X6 686 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 HDAC11Q96DB2 347 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PGBD4Q96DM1 585 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PTCD3Q96EY7 689 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 LGMNQ99538 433 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PTPN18Q99952 460 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MTG1Q9BT17 334 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ULBP1Q9BZM6 244 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SLC13A1Q9BZW2 595 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 GBA3Q9H227 469 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PRDM12Q9H4Q4 367 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CAPN10Q9HC96 672 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ALG13Q9NP73 1137 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 FAM105AQ9NUU6 356 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 NSMCE4AQ9NXX6 385 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SEPT10Q9P0V9 454 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ZFATQ9P243 1243 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 KANSL3Q9P2N6 904 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MID2Q9UJV3 735 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 FBXW11Q9UKB1 542 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 DSEQ9UL01 958 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CLDN5O00501 218 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 FCHO1O14526 889 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 GYG2O15488 501 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 H2AFYO75367 372 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 USP1O94782 785 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 LUC7L3O95232 432 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CELF2O95319 508 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ANP32DO95626 131 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 LTFP02788 710 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ODC1P11926 461 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ERCC2P18074 760 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ACAT1P24752 427 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 GRK2P25098 689 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MGAT1P26572 445 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 EPHB2P29323 1055 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SERPINB3P29508 390 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 HADHAP40939 763 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SERPINB8P50452 374 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CDK7P50613 346 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SESN2P58004 480 aaPredicted RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 FOXK1P85037 733 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PURAQ00577 322 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SEMA3BQ13214 749 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PRPSAP1Q14558 356 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ZRSR2Q15696 482 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CCDC153Q494R4 210 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CDHR3Q6ZTQ4 885 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PAQR9Q6ZVX9 377 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 BEND5Q7L4P6 421 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PID1Q7Z2X4 250 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 METTL23Q86XA0 190 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ZNF567Q8N184 647 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ENDOVQ8N8Q3 282 aaKnown RBP7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ARRDC4Q8NCT1 418 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 SMC1BQ8NDV3 1235 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 FAM13CQ8NE31 585 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 PPP4R1Q8TF05 950 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 ISL2Q96A47 359 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 MCUR1Q96AQ8 359 aa7.45□□□□□ -1.22
VPS13C-206ENST00000558338 CERS2Q96G23 380 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms