RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 USP18Q9UMW8 372 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 USP15Q9Y4E8 981 aaPredicted RBP4.3□□□□□ -1.72
ATXN3-240ENST00000556339 PCDHB6Q9Y5E3 794 aa4.3□□□□□ -1.72
ATXN3-240ENST00000556339 IGLV3-22A0A075B6J6 115 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 A0A0U1RQF3 1178 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 BECN2A8MW95 431 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 IKBKBO14920 756 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ADAMTS3O15072 1205 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CCNT1O60563 726 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 KINO60870 393 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ZC3H11AO75152 810 aaKnown RBP eCLIP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 TBX10O75333 385 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 NDUFA10O95299 355 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 LARGE1O95461 756 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 EYA4O95677 639 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 TPM1P09493 284 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 DARSP14868 501 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 HOXB8P17481 243 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 KLRC2P26717 231 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 PBX3P40426 434 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 MTHFRP42898 656 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 QARSP47897 775 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 GZMKP49863 264 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 GPC3P51654 580 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 POLGP54098 1239 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 PSMC5P62195 406 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 TUBB4BP68371 445 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 COASYQ13057 564 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CAMK1Q14012 370 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 TRIM29Q14134 588 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 IQCB1Q15051 598 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ZRSR1Q15695 479 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 Q4G0T1 1027 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ANO6Q4KMQ2 910 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 FNDC3BQ53EP0 1204 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 XKR9Q5GH70 373 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 HERC4Q5GLZ8 1057 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 NOMO2Q5JPE7 1267 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 RARS2Q5T160 578 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 NCAPH2Q6IBW4 605 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 GALNT17Q6IS24 598 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ANKRD54Q6NXT1 300 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 UNQ6494/PRO21346Q6UXR6 183 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 KANSL1Q7Z3B3 1105 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 PASD1Q8IV76 773 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 TPH2Q8IWU9 490 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 DRC7Q8IY82 874 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CEP57L1Q8IYX8 460 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 VPS52Q8N1B4 723 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 LRRC43Q8N309 656 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CDYL2Q8N8U2 506 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 NECAB1Q8N987 351 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC150Q8NCX0 1101 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 NSUN7Q8NE18 718 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CCDC112Q8NEF3 446 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ENGASEQ8NFI3 743 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 RDM1Q8NG50 284 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 OR52N2Q8NGI0 321 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 WASF1Q92558 559 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 ATOH1Q92858 354 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 SLC5A5Q92911 643 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 MSLNLQ96KJ4 702 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 RIPOR3Q96MK2 946 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 FAM20AQ96MK3 541 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 NLRP4Q96MN2 994 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 NAP1L4Q99733 375 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 MRPL9Q9BYD2 267 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CPEB1Q9BZB8 566 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 MFSD1Q9H3U5 465 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 TTC12Q9H892 705 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 AKIP1Q9NQ31 210 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 INTS7Q9NVH2 962 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 OGFRQ9NZT2 677 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 DDX25Q9UHL0 483 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 KCNJ14Q9UNX9 436 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 CLCA2Q9UQC9 943 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 PIN4Q9Y237 131 aaKnown RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 LZTS1Q9Y250 596 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 SPO11Q9Y5K1 396 aa4.29□□□□□ -1.72
ATXN3-240ENST00000556339 MORC2Q9Y6X9 1032 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-240ENST00000556339 FAM186AA6NE01 2351 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 CACNA1HO95180 2353 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 A0A0A6YYK5 440 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 FAM237AA0A1B0GTK4 181 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 TMEM150BA6NC51 233 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 GOLGA6L9A6NEM1 432 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 HIDE1A8MVS5 230 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 AHRRA9YTQ3 701 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 LOC730098B7Z3J9 87 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 CBX4O00257 560 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ASAP2O43150 1006 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 PSMD10O75832 226 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 DNAJC8O75937 253 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-240ENST00000556339 NCR1O76036 304 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 ERLIN2O94905 339 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 TDP2O95551 362 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 WEE2P0C1S8 567 aa4.28□□□□□ -1.72
ATXN3-240ENST00000556339 LINC00271P0C7V0 271 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms