RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 ACTL7BQ9Y614 415 aa15.12■□□□□ 0.01
VPS33B-205ENST00000556096 GBF1Q92538 1859 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 WASH4PA8MWX3 477 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 GSTA2P09210 222 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 LAG3P18627 525 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 ATF6P18850 670 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 PTPN3P26045 913 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 SSTR1P30872 391 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 GUCY1A3Q02108 690 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 NR1H3Q13133 447 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 BTG3Q14201 252 aaPredicted RBP15.11■□□□□ 0.01
VPS33B-205ENST00000556096 KLHL38Q2WGJ6 581 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 TPGS2Q68CL5 300 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 RWDD4Q6NW29 188 aaKnown RBP15.11■□□□□ 0.01
VPS33B-205ENST00000556096 LEKR1Q6ZMV7 388 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 TADA2BQ86TJ2 420 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 IGDCC3Q8IVU1 814 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 HERC6Q8IVU3 1022 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 NETO2Q8NC67 525 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 OVCA2Q8WZ82 227 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 MAML1Q92585 1016 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 TMEM169Q96HH4 297 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 TSGA13Q96PP4 275 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 YME1L1Q96TA2 773 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 CLSTN3Q9BQT9 956 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 ACSS3Q9H6R3 686 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 TRHDEQ9UKU6 1024 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 CHMP2BQ9UQN3 213 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 HS3ST4Q9Y661 456 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 GREB1Q4ZG55 1949 aa15.11■□□□□ 0.01
VPS33B-205ENST00000556096 LCHNA4D1U4 455 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 ABLIM3O94929 683 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 APOEP02649 317 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 LSP1P33241 339 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 GEMIN4P57678 1058 aaKnown RBP15.1■□□□□ 0.01
VPS33B-205ENST00000556096 EFEMP1Q12805 493 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 MTA1Q13330 715 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 FAM182AQ5T1J6 154 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 SYCP2LQ5T4T6 812 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 ZNF534Q76KX8 674 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 PID1Q7Z2X4 250 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 AGGF1Q8N302 714 aaeCLIP15.1■□□□□ 0.01
VPS33B-205ENST00000556096 ATP6V0D2Q8N8Y2 350 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 ZNF461Q8TAF7 563 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 FBF1Q8TES7 1133 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 GIPC2Q8TF65 315 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 CDK5RAP1Q96SZ6 601 aaKnown RBP15.1■□□□□ 0.01
VPS33B-205ENST00000556096 SPG21Q9NZD8 308 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 MARCH2Q9P0N8 246 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 SEPT10Q9P0V9 454 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 CTNNAL1Q9UBT7 734 aa15.1■□□□□ 0.01
VPS33B-205ENST00000556096 MRPL42Q9Y6G3 142 aaKnown RBP15.1■□□□□ 0.01
VPS33B-205ENST00000556096 TRIOBPQ9H2D6 2365 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 E9PAM4 449 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 AVILO75366 819 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 GJB5O95377 273 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 IGLV3-27P01718 113 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 RPL17P18621 184 aaKnown RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 CCNCP24863 283 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 TUBP50607 506 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 KPNA1P52294 538 aaPredicted RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 RING1Q06587 406 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 C10orf120Q5SQS8 335 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 SNX30Q5VWJ9 437 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 TTC19Q6DKK2 380 aaPredicted RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 LRRC31Q6UY01 552 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 CAPN12Q6ZSI9 719 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 DDX53Q86TM3 631 aaKnown RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 LRRC49Q8IUZ0 686 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 CYP4X1Q8N118 509 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 PDZD8Q8NEN9 1154 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 BTN2A3PQ96KV6 586 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 SIGLEC10Q96LC7 697 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 DHRS4Q9BTZ2 278 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 PPARGC1AQ9UBK2 798 aaKnown RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 POC1B-GALNT4F8VUJ3 575 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 KCNK1O00180 336 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 TRDMT1O14717 391 aaKnown RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 TLL1O43897 1013 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 ARHGEF15O94989 841 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 MOCS2O96007 188 aaPredicted RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 TEX44Q53QW1 395 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 PIK3R6Q5UE93 754 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 AFMIDQ63HM1 303 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 LRRC8BQ6P9F7 803 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 SPRED2Q7Z698 418 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 C14orf80Q86SX3 495 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 ARHGAP12Q8IWW6 846 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 GPR65Q8IYL9 337 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 ZNF683Q8IZ20 524 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 RTL3Q8N8U3 475 aaKnown RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 CYTH2Q99418 400 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 DONSONQ9NYP3 566 aa15.09■□□□□ 0.01
VPS33B-205ENST00000556096 KLHL8Q9P2G9 620 aaPredicted RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 PSMC3IPQ9P2W1 217 aaPredicted RBP15.09■□□□□ 0.01
VPS33B-205ENST00000556096 TBX18O95935 607 aa15.08■□□□□ 0
VPS33B-205ENST00000556096 PSMB4P28070 264 aa15.08■□□□□ 0
VPS33B-205ENST00000556096 HTRA4P83105 476 aaPredicted RBP15.08■□□□□ 0
VPS33B-205ENST00000556096 MTM1Q13496 603 aa15.08■□□□□ 0
VPS33B-205ENST00000556096 MS4A13Q5J8X5 152 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms