RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 MCEEQ96PE7 176 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 DUSP15Q9H1R2 295 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 PARD6AQ9NPB6 346 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 CD93Q9NPY3 652 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 TMEM51Q9NW97 253 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 KIAA1522Q9P206 1035 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-219ENST00000555563 PLA2G4CQ9UP65 541 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 SPAG17Q6Q759 2223 aa14.15□□□□□ -0.14
SHMT2-219ENST00000555563 ITIH6Q6UXX5 1313 aa14.15□□□□□ -0.15
SHMT2-219ENST00000555563 SIGLEC16A6NMB1 481 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 EPN2O95208 641 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 ASLP04424 464 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 MZF1P28698 734 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-219ENST00000555563 CTSOP43234 321 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-219ENST00000555563 HDAC4P56524 1084 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 RPL7AP62424 266 aaKnown RBP14.14□□□□□ -0.15
SHMT2-219ENST00000555563 ZBED6P86452 979 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 SPEM2Q0P670 501 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 C5orf22Q49AR2 442 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 ALFQ53S48 1182 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 TDRD12Q587J7 1177 aaKnown RBP14.14□□□□□ -0.15
SHMT2-219ENST00000555563 PPP1R15BQ5SWA1 713 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 ARTNQ5T4W7 220 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 HGSNATQ68CP4 663 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 PMS2CLQ68D20 193 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 PPP1R2P3Q6NXS1 205 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 WDR59Q6PJI9 974 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 STRADAQ7RTN6 431 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 C11orf74Q86VG3 221 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 CACUL1Q86Y37 369 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 OR52K2Q8NGK3 314 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 FAM172AQ8WUF8 416 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 IQCDQ96DY2 449 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 MYO19Q96H55 970 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 LOXL4Q96JB6 756 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 MRGPRX3Q96LB0 322 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 HAPLN3Q96S86 360 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 MKRN2Q9H000 416 aaKnown RBP14.14□□□□□ -0.15
SHMT2-219ENST00000555563 MBD1Q9UIS9 605 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-219ENST00000555563 CAPN11Q9UMQ6 739 aa14.14□□□□□ -0.15
SHMT2-219ENST00000555563 NYNRINQ9P2P1 1898 aaKnown RBP14.14□□□□□ -0.15
SHMT2-219ENST00000555563 E9PAM4 449 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 CCP110O43303 1012 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 CNTN5O94779 1100 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 MOCS3O95396 460 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 TPM3P06753 285 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 TGM1P22735 817 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 COPAP53621 1224 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 CDH4P55283 916 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 CAMK2GQ13555 558 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-219ENST00000555563 LRRC31Q6UY01 552 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 CPLX3Q8WVH0 158 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 CENPIQ92674 756 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-219ENST00000555563 SYN2Q92777 582 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-219ENST00000555563 RMDN1Q96DB5 314 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 VCPIP1Q96JH7 1222 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 C1orf74Q96LT6 269 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 MTG2Q9H4K7 406 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 PRDM16Q9HAZ2 1276 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 MPP6Q9NZW5 540 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 CYP8B1Q9UNU6 501 aa14.13□□□□□ -0.15
SHMT2-219ENST00000555563 SPTBN4Q9H254 2564 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 IGLV3-10A0A075B6K4 115 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 IGHV1OR15-9A0A0B4J2B8 117 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ANKRD62A6NC57 917 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 CBFA2T2O43439 604 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ZNF217O75362 1048 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 CLDN11O75508 207 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 RHOBTB1O94844 696 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 PLEKP08567 350 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ZNF143P52747 638 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 OXCT1P55809 520 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ST8SIA6P61647 398 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ECT2LQ008S8 904 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 OGDHQ02218 1023 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ZNF177Q13360 481 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 MAMLD1Q13495 774 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 SLC12A1Q13621 1099 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 BYSLQ13895 437 aaKnown RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 CCDC6Q16204 474 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ACBD5Q5T8D3 534 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 DCUN1D2Q6PH85 259 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 TFAP2DQ7Z6R9 452 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 TMPRSS6Q8IU80 811 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 CCDC185Q8N715 623 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ALG14Q96F25 216 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ARRDC1-AS1Q9H2J1 176 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 SEMA4GQ9NTN9 838 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 USP18Q9UMW8 372 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 ERVW-1Q9UQF0 538 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 TBC1D30Q9Y2I9 924 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 LUC7L2Q9Y383 392 aaKnown RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 PCDHGA5Q9Y5G8 931 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 TNRC6BQ9UPQ9 1833 aaKnown RBP14.12□□□□□ -0.15
SHMT2-219ENST00000555563 GVINP1Q7Z2Y8 2422 aa14.12□□□□□ -0.15
SHMT2-219ENST00000555563 DRGXA6NNA5 263 aa14.11□□□□□ -0.15
SHMT2-219ENST00000555563 MAP3K13O43283 966 aa14.11□□□□□ -0.15
SHMT2-219ENST00000555563 SRGAP2O75044 1071 aa14.11□□□□□ -0.15
SHMT2-219ENST00000555563 LRP3O75074 770 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms