RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 C11orf84Q9BUA3 381 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-207ENST00000553837 Q9H521 79 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 RAB6BQ9NRW1 208 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 DDX18Q9NVP1 670 aaKnown RBP12.57□□□□□ -0.4
SHMT2-207ENST00000553837 CNTN3Q9P232 1028 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 THEGQ9P2T0 379 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 ADAMTS6Q9UKP5 1117 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 DMTF1Q9Y222 760 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 MFHAS1Q9Y4C4 1052 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 NR2E3Q9Y5X4 410 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 IKBKGQ9Y6K9 419 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 CENPFP49454 3210 aa12.57□□□□□ -0.4
SHMT2-207ENST00000553837 DNAH12Q6ZR08 3092 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 APOL1O14791 398 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 DENRO43583 198 aaKnown RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 SMIM18P0DKX4 95 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 SMIM10L2AP0DMW4 78 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 SMIM10L2BP0DMW5 78 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 TSHRP16473 764 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 IGFBP6P24592 240 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 ADORA2BP29275 332 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 SDC4P31431 198 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 BCAR1P56945 870 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 YWHAZP63104 245 aaKnown RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 GBE1Q04446 702 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 PDK2Q15119 407 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 BOLA3Q53S33 107 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 PPP6R3Q5H9R7 873 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 SH2D5Q6ZV89 423 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 CAND1Q86VP6 1230 aaKnown RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 NDRG1Q92597 394 aaKnown RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 RTP4Q96DX8 246 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 PTPN18Q99952 460 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 MRPS26Q9BYN8 205 aaKnown RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 PLEKHA5Q9HAU0 1116 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 GOLGA2P5Q9HBQ8 144 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 MTMR10Q9NXD2 777 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 CXorf49A8MYA2 514 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 CCNT2O60583 730 aaKnown RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 SERPINA6P08185 405 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 L1CAMP32004 1257 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 ZNF200P98182 395 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 PDE1BQ01064 536 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 PLOD1Q02809 727 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 SOX4Q06945 474 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 FAAP100Q0VG06 881 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 STILQ15468 1287 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 TRIP10Q15642 601 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 MARVELD2Q8N4S9 558 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 TTC39CQ8N584 583 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 GTF3C2Q8WUA4 911 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 GAB3Q8WWW8 586 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 GCOM2Q9BZD3 368 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 NACA2Q9H009 215 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 FAM124BQ9H5Z6 455 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-207ENST00000553837 LZTS1Q9Y250 596 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 DERAQ9Y315 318 aa12.56□□□□□ -0.4
SHMT2-207ENST00000553837 TMEM247A6NEH6 219 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 CASQ2O14958 399 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-207ENST00000553837 CHADO15335 359 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 DYNC1LI2O43237 492 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-207ENST00000553837 METTL18O95568 372 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 LCP1P13796 627 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 DARSP14868 501 aaKnown RBP12.55□□□□□ -0.4
SHMT2-207ENST00000553837 CPA3P15088 417 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 CYP2F1P24903 491 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 PEX2P28328 305 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 HOXD12P35452 270 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 CPOXP36551 454 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 ALDH18A1P54886 795 aaKnown RBP12.55□□□□□ -0.4
SHMT2-207ENST00000553837 YWHAGP61981 247 aaKnown RBP eCLIP12.55□□□□□ -0.4
SHMT2-207ENST00000553837 HSF5Q4G112 596 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-207ENST00000553837 ARHGAP17Q68EM7 881 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 RNF111Q6ZNA4 994 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 SLC15A3Q8IY34 581 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 CCDC185Q8N715 623 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 LRRC52Q8N7C0 313 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 DDI1Q8WTU0 396 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 SLC44A1Q8WWI5 657 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 USP6NLQ92738 828 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 CFAP36Q96G28 342 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 RILPQ96NA2 401 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 NRDE2Q9H7Z3 1164 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 HESX1Q9UBX0 185 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 TTLL3Q9Y4R7 772 aa12.55□□□□□ -0.4
SHMT2-207ENST00000553837 SMIM28A0A1B0GU29 152 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 BCLAF3A2AJT9 711 aaKnown RBP12.54□□□□□ -0.4
SHMT2-207ENST00000553837 PRR5-ARHGAP8B1AHC4 643 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 PIRO00625 290 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 MDM4O15151 490 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 AOC1P19801 751 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 TGM2P21980 687 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 TKTP29401 623 aaKnown RBP12.54□□□□□ -0.4
SHMT2-207ENST00000553837 GALK1P51570 392 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 EMP3P54852 163 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 AQP5P55064 265 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 ARHGAP8P85298 464 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 PTK7Q13308 1070 aa12.54□□□□□ -0.4
SHMT2-207ENST00000553837 CCNIQ14094 377 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms