RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 NUMBP49757 651 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 RGS7P49802 495 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 METAP1P53582 386 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 TBX4P57082 545 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CXADRP78310 365 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 INSM1Q01101 510 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CFHR1Q03591 330 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 DNM1Q05193 864 aaKnown RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 SFSWAPQ12872 951 aaKnown RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 ILKQ13418 452 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 ADAM9Q13443 819 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CUL2Q13617 745 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CDH18Q13634 790 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 ARID5BQ14865 1188 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D25Q3MII6 688 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CBWD6Q4V339 395 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 PKDCCQ504Y2 493 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 SLC45A4Q5BKX6 768 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CBWD3Q5JTY5 395 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CBWD5Q5RIA9 395 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 NAPEPLDQ6IQ20 393 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 KDM7AQ6ZMT4 941 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 SND1Q7KZF4 910 aaKnown RBP eCLIP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 UNC45BQ8IWX7 931 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CFAP52Q8N1V2 620 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 SCML4Q8N228 414 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 ZNF557Q8N988 423 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CLEC4CQ8WTT0 213 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 FGF11Q92914 225 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 FCRL2Q96LA5 508 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 IRX2Q9BZI1 471 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 NUCKS1Q9H1E3 243 aaKnown RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 SLCO3A1Q9UIG8 710 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 CLCA2Q9UQC9 943 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 KNTC1P50748 2209 aa9.41□□□□□ -0.9
SYNE2-209ENST00000553308 HELZ2Q9BYK8 2649 aaKnown RBP9.41□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3DA0A087WVF3 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3IA0A087WXS9 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3EA0A087X179 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3KA0A087X1G2 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TARSL2A2RTX5 802 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TYW5A2RUC4 315 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3FA6NER0 549 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 CYSRT1A8MQ03 144 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3LB9A6J9 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TRIM38O00635 465 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 CAPN9O14815 690 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 LATO43561 262 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 LUC7L3O95232 432 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 ADH1BP00325 375 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 IL1BP01584 269 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 LTFP02788 710 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 MYL1P05976 194 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 SRPRAP08240 638 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3HP0C7X1 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 VDRP11473 427 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 VAV1P15498 845 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 GOT1P17174 413 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 C5AR1P21730 350 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 ACP1P24666 158 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 MZF1P28698 734 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 MAT2AP31153 395 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 DRD3P35462 400 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 ACTN2P35609 894 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 STK19P49842 368 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 MCCD1P59942 119 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 DPYDQ12882 1025 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 PKP1Q13835 747 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 PROX2Q3B8N5 592 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 DCAF17Q5H9S7 520 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 MS4A13Q5J8X5 152 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3GQ6DHY5 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3CQ6IPX1 549 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 PMF1Q6P1K2 205 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TBC1D3Q8IZP1 549 aaPredicted RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 APCDD1Q8J025 514 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 GUF1Q8N442 669 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 OXR1Q8N573 874 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 UBR7Q8N806 425 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 DCBLD1Q8N8Z6 715 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 MFSD2AQ8NA29 543 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 KDM1BQ8NB78 822 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 RFFLQ8WZ73 363 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 TFAP2BQ92481 460 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 PTPRN2Q92932 1015 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 NAF1Q96HR8 494 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 RPL10LQ96L21 214 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 ERVMER34-1Q9H9K5 563 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 USP25Q9UHP3 1055 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 XPO7Q9UIA9 1087 aaKnown RBP9.4□□□□□ -0.9
SYNE2-209ENST00000553308 RCOR1Q9UKL0 485 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 HPSEQ9Y251 543 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 CA5BQ9Y2D0 317 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 CEP83Q9Y592 693 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 PCDHB1Q9Y5F3 818 aa9.4□□□□□ -0.9
SYNE2-209ENST00000553308 J3QKU1 62 aa9.39□□□□□ -0.91
SYNE2-209ENST00000553308 M0QYV0 167 aa9.39□□□□□ -0.91
SYNE2-209ENST00000553308 SIGLEC6O43699 453 aa9.39□□□□□ -0.91
SYNE2-209ENST00000553308 RTN2O75298 545 aa9.39□□□□□ -0.91
SYNE2-209ENST00000553308 MOCS2O96007 188 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms