RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 LBHD1Q9BQE6 289 aaPredicted RBP6.2□□□□□ -1.42
SCFD1-208ENST00000553278 HTATIP2Q9BUP3 242 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 MEGF9Q9H1U4 602 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 SAP30LQ9HAJ7 183 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 PDE7BQ9NP56 450 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 MTMR4Q9NYA4 1195 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 IL1RAPL1Q9NZN1 696 aa6.2□□□□□ -1.42
SCFD1-208ENST00000553278 A0A1W2PQM1 296 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 NPIPB13A6NJU9 1138 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 NPIPB5A8MRT5 1133 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 NPIPB4C9JG80 1138 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 TRIM24O15164 1050 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 CYP27B1O15528 508 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 TMPRSS11DO60235 418 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 NOBOXO60393 691 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 PDE8BO95263 885 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 C1SP09871 688 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 TMIGD3P0DMS9 266 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-208ENST00000553278 ARSAP15289 507 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 PPP3CBP16298 524 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 SAT1P21673 171 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 AVPR2P30518 371 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 CPOXP36551 454 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 GARSP41250 739 aaKnown RBP6.19□□□□□ -1.42
SCFD1-208ENST00000553278 LMAN1P49257 510 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 VAV2P52735 878 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 ITIH3Q06033 890 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 BYSLQ13895 437 aaKnown RBP6.19□□□□□ -1.42
SCFD1-208ENST00000553278 SH2D4BQ5SQS7 431 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 UBAP2Q5T6F2 1119 aaKnown RBP6.19□□□□□ -1.42
SCFD1-208ENST00000553278 DENND2CQ68D51 928 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 TTI2Q6NXR4 508 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 SARM1Q6SZW1 724 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 MAVSQ7Z434 540 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 POLNQ7Z5Q5 900 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 CREBRFQ8IUR6 639 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 TP53I13Q8NBR0 393 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-208ENST00000553278 BEND2Q8NDZ0 799 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 RAB40AQ8WXH6 277 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 NACC2Q96BF6 587 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 FAM149B1Q96BN6 582 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 KLHL15Q96M94 604 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 CLSTN3Q9BQT9 956 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 TEX12Q9BXU0 123 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 ALOXE3Q9BYJ1 711 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 EDEM3Q9BZQ6 932 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 TRIM31Q9BZY9 425 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 SLC35C2Q9NQQ7 365 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 MRPL15Q9P015 296 aaKnown RBP6.19□□□□□ -1.42
SCFD1-208ENST00000553278 MGAT4CQ9UBM8 478 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 CDH22Q9UJ99 828 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 ZNF112Q9UJU3 913 aa6.19□□□□□ -1.42
SCFD1-208ENST00000553278 UBE2CO00762 179 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 LAMTOR5O43504 91 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 CSPG5O95196 566 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 ONECUT2O95948 504 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 FESP07332 822 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 CHRM4P08173 479 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 PRPH2P23942 346 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 PBX3P40426 434 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 DEUP1Q05D60 604 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 CCDC15Q0P6D6 951 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 AIMP1Q12904 312 aaKnown RBP6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SCARB2Q14108 478 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 RAB41Q5JT25 222 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 C1orf141Q5JVX7 400 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 TREML2Q5T2D2 321 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 ZNF618Q5T7W0 954 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 ARMC6Q6NXE6 501 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 TMEM81Q6P7N7 255 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 MAMDC4Q6UXC1 1216 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 DPY19L3Q6ZPD9 716 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SCN4BQ8IWT1 228 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 FUKQ8N0W3 1084 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SIRT6Q8N6T7 355 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 ADPRHL1Q8NDY3 354 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 CTHRC1Q96CG8 243 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 PRR11Q96HE9 360 aaPredicted RBP6.18□□□□□ -1.42
SCFD1-208ENST00000553278 ELOVL1Q9BW60 279 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 TEX101Q9BY14 249 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SLC22A11Q9NSA0 550 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 TMEM74BQ9NUR3 256 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 TAB2Q9NYJ8 693 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SUCLA2Q9P2R7 463 aaPredicted RBP6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SLC25A13Q9UJS0 675 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 VPS4AQ9UN37 437 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SH2B3Q9UQQ2 575 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 FAM169AQ9Y6X4 670 aa6.18□□□□□ -1.42
SCFD1-208ENST00000553278 SOS1Q07889 1333 aaPredicted RBP6.18□□□□□ -1.42
SCFD1-208ENST00000553278 FRMD3A2A2Y4 597 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 TTC36A6NLP5 189 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 A8MV72 311 aaPredicted RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 MUSKO15146 869 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 HBP1O60381 514 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 SCAF4O95104 1147 aaKnown RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 DLDP09622 509 aaKnown RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 ZNF8P17098 575 aaPredicted RBP6.17□□□□□ -1.42
SCFD1-208ENST00000553278 IGFBP2P18065 325 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 MUTP22033 750 aa6.17□□□□□ -1.42
SCFD1-208ENST00000553278 DUSP1P28562 367 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms