RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 RABGAP1LQ5R372 815 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 RNF219Q5W0B1 726 aaPredicted RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 FBXL22Q6P050 247 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 TMEM35BQ8NCS4 154 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 GPT2Q8TD30 523 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 GANCQ8TET4 914 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 RPL10LQ96L21 214 aaKnown RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 RPRD1AQ96P16 312 aaPredicted RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 NAA15Q9BXJ9 866 aaKnown RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 RSPH9Q9H1X1 276 aaPredicted RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 VANGL2Q9ULK5 521 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 CHD8Q9HCK8 2581 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 A0A1B0GVM2 712 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 TCAF2A6NFQ2 919 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 SEMA4FO95754 770 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 C7P10643 843 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 MZF1P28698 734 aaPredicted RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 CDH5P33151 784 aaPredicted RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 MATKP42679 507 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 STK19P49842 368 aaPredicted RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 SHC2P98077 582 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 AUHQ13825 339 aaKnown RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 TTC39BQ5VTQ0 682 aaPredicted RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 PIP4P1Q86T03 277 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 ZDHHC17Q8IUH5 632 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 KDM1BQ8NB78 822 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 ZNF397Q8NF99 534 aaPredicted RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 ENOX1Q8TC92 643 aaKnown RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 IGSF8Q969P0 613 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 GBP4Q96PP9 640 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 PCED1AQ9H1Q7 454 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 VPS16Q9H269 839 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 PABPC3Q9H361 631 aaKnown RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 DNAAF2Q9NVR5 837 aaKnown RBP16.85■□□□□ 0.29
VPS29-207ENST00000549970 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.85■□□□□ 0.29
VPS29-207ENST00000549970 SLCO3A1Q9UIG8 710 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 HS3ST4Q9Y661 456 aa16.85■□□□□ 0.29
VPS29-207ENST00000549970 EDDM13A0A1B0GTR0 161 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 SPAARA0A1B0GVQ0 90 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 UPK3BL1B0FP48 263 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 UPK3BL2E5RIL1 263 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 F8VZ95 297 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 RNASEH1O60930 286 aaKnown RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 PAGE1O75459 146 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 CD59P13987 128 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 TFE3P19532 575 aaPredicted RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 KLK7P49862 253 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 SULT1E1P49888 294 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 IRAK1P51617 712 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 C2CD6Q53TS8 623 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 C9orf64Q5T6V5 341 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 FAM102AQ5T9C2 384 aaPredicted RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 OTUD1Q5VV17 481 aaPredicted RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 CXorf57Q6NSI4 855 aaKnown RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 NOP9Q86U38 636 aaKnown RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 MMAAQ8IVH4 418 aaKnown RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 C18orf8Q96DM3 657 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 NPY6RQ99463 290 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 STK33Q9BYT3 514 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 ADAM33Q9BZ11 813 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 ZDHHC5Q9C0B5 715 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 SIK2Q9H0K1 926 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 SGK2Q9HBY8 427 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 PIGVQ9NUD9 493 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 FBXL12Q9NXK8 326 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 STAP1Q9ULZ2 295 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 SCML1Q9UN30 329 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 NCKAP1Q9Y2A7 1128 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 SLCO1B1Q9Y6L6 691 aa16.84■□□□□ 0.29
VPS29-207ENST00000549970 MAP1BP46821 2468 aaKnown RBP16.84■□□□□ 0.29
VPS29-207ENST00000549970 SPEGQ15772 3267 aa16.83■□□□□ 0.29
VPS29-207ENST00000549970 A0A1W2PP55 124 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 TARSL2A2RTX5 802 aaKnown RBP16.83■□□□□ 0.28
VPS29-207ENST00000549970 FAM47DPA6NHR8 397 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 MID1O15344 667 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 GJB3O75712 270 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 FSBPO95073 299 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 MMEP08473 750 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 SPINK2P20155 84 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 NNMTP40261 264 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 SIM1P81133 766 aaPredicted RBP16.83■□□□□ 0.28
VPS29-207ENST00000549970 SLC12A1Q13621 1099 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 ARID5BQ14865 1188 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 KRT31Q15323 416 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 CST6Q15828 149 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 CDKAL1Q5VV42 579 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 ITIH6Q6UXX5 1313 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 C14orf80Q86SX3 495 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 ERICH1Q86X53 443 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 XYLT1Q86Y38 959 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 C1orf216Q8TAB5 229 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 BIRC7Q96CA5 298 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 TKTL2Q9H0I9 626 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 GANQ9H2C0 597 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 EPG5Q9HCE0 2579 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 RRN3Q9NYV6 651 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 SERGEFQ9UGK8 458 aa16.83■□□□□ 0.28
VPS29-207ENST00000549970 NYNRINQ9P2P1 1898 aaKnown RBP16.82■□□□□ 0.28
VPS29-207ENST00000549970 FRYQ5TBA9 3013 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms