RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MAGEF1Q9HAY2 307 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 INTS6Q9UL03 887 aaKnown RBP13.24□□□□□ -0.29
SCAF11-208ENST00000546534 VPS9D1Q9Y2B5 631 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 ADGRG1Q9Y653 693 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 MGAQ8IWI9 3026 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 COL6A6A6NMZ7 2263 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 TTC34A8MYJ7 566 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 TRIM38O00635 465 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 POLR2DO15514 142 aaKnown RBP13.23□□□□□ -0.29
SCAF11-208ENST00000546534 SDC3O75056 442 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 PPP6R2O75170 966 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 MPOP05164 745 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 TRIM49P0CI25 452 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 TRIM49CP0CI26 452 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 GOT1P17174 413 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 CSKP41240 450 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 VAMP7P51809 220 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 RAD23BP54727 409 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 UCNP55089 124 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 E2F1Q01094 437 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 PPP3CAQ08209 521 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 ARID5BQ14865 1188 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 BSPRYQ5W0U4 402 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 NAPEPLDQ6IQ20 393 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 SND1Q7KZF4 910 aaKnown RBP eCLIP13.23□□□□□ -0.29
SCAF11-208ENST00000546534 GRAMD1CQ8IYS0 662 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 MFSD2AQ8NA29 543 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 ANKRD52Q8NB46 1076 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 KIAA0895Q8NCT3 520 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 OR14C36Q8NHC7 312 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 ZNF578Q96N58 590 aaPredicted RBP13.23□□□□□ -0.29
SCAF11-208ENST00000546534 STIM2Q9P246 746 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 RABGEF1Q9UJ41 708 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 MTMR6Q9Y217 621 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 FRMD4BQ9Y2L6 1034 aa13.23□□□□□ -0.29
SCAF11-208ENST00000546534 YJEFN3A6XGL0 299 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 E7ENQ6 273 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 PDXKO00764 312 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 LATO43561 262 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 SIGLEC6O43699 453 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 KLRC4O43908 158 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 CUTAO60888 179 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 ASLP04424 464 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 C6P13671 934 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 SLC6A4P31645 630 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 PSMD8P48556 350 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 ADPRHP54922 357 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 SLC8A3P57103 927 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 PPP2CBP62714 309 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 PPP2CAP67775 309 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 KCNC4Q03721 635 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 FAM133BQ5BKY9 247 aaKnown RBP13.22□□□□□ -0.29
SCAF11-208ENST00000546534 ARHGAP17Q68EM7 881 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 MFN1Q8IWA4 741 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 FIBINQ8TAL6 211 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 TTC9Q92623 222 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 ZSCAN16Q9H4T2 348 aaPredicted RBP13.22□□□□□ -0.29
SCAF11-208ENST00000546534 MMRN2Q9H8L6 949 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 CISHQ9NSE2 258 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 KIAA1468Q9P260 1216 aa13.22□□□□□ -0.29
SCAF11-208ENST00000546534 TPX2Q9ULW0 747 aaKnown RBP13.22□□□□□ -0.29
SCAF11-208ENST00000546534 ARID1BQ8NFD5 2236 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3DA0A087WVF3 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3IA0A087WXS9 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3EA0A087X179 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3KA0A087X1G2 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TARSL2A2RTX5 802 aaKnown RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3FA6NER0 549 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3LB9A6J9 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 XPO1O14980 1071 aaKnown RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3HP0C7X1 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 PDIA4P13667 645 aaKnown RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 CTSOP43234 321 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 ADIGQ0VDE8 80 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 ZNF211Q13398 564 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 GOLGA7BQ2TAP0 167 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3GQ6DHY5 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3CQ6IPX1 549 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 MMS22LQ6ZRQ5 1243 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TBC1D3Q8IZP1 549 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 STK40Q8N2I9 435 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 SLC25A45Q8N413 288 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 ZNF557Q8N988 423 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 KDM1BQ8NB78 822 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 TATDN2Q93075 761 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 MYEOVQ96EZ4 313 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 PRICKLE1Q96MT3 831 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 IRX2Q9BZI1 471 aaPredicted RBP13.21□□□□□ -0.29
SCAF11-208ENST00000546534 LRRC4Q9HBW1 653 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 ABCC13Q9NSE7 274 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 ARHGAP20Q9P2F6 1191 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 SLCO3A1Q9UIG8 710 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 ERVW-1Q9UQF0 538 aa13.21□□□□□ -0.29
SCAF11-208ENST00000546534 ITIH6Q6UXX5 1313 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 EDDM13A0A1B0GTR0 161 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 IRAK2O43187 625 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 KLK10O43240 276 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 ACSL4O60488 711 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 USP12O75317 370 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 DXOO77932 396 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms