RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 TICAM1Q8IUC6 712 aa8.96□□□□□ -0.97
TDP1-204ENST00000545686 COLGALT1Q8NBJ5 622 aa8.96□□□□□ -0.97
TDP1-204ENST00000545686 RDH11Q8TC12 318 aa8.96□□□□□ -0.97
TDP1-204ENST00000545686 TCF7L2Q9NQB0 619 aa8.96□□□□□ -0.97
TDP1-204ENST00000545686 SLC17A6Q9P2U8 582 aa8.96□□□□□ -0.97
TDP1-204ENST00000545686 SHROOM3Q8TF72 1996 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 RGSL1A5PLK6 1076 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 CAPN8A6NHC0 703 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 RNF103O00237 685 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 DNAJA2O60884 412 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 CLPTM1O96005 669 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 CAPNS1P04632 268 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 ETS2P15036 469 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 PMLP29590 882 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 ARL4AP40617 200 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 ADRM1Q16186 407 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 SLC10A6Q3KNW5 377 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 PPP1R26Q5T8A7 1209 aaPredicted RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 BORAQ6PGQ7 559 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 BNC2Q6ZN30 1099 aaPredicted RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 STRADAQ7RTN6 431 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 CDR2LQ86X02 465 aaPredicted RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 RIOX2Q8IUF8 465 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 CPSF7Q8N684 471 aaKnown RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 ZNF781Q8N8C0 355 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 KYQ8NBH2 561 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 RP9Q8TA86 221 aaKnown RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 LZICQ8WZA0 190 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 LENG1Q96BZ8 264 aaPredicted RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 LRGUKQ96M69 825 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 GCNAQ96QF7 691 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 MPHOSPH6Q99547 160 aaKnown RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 MINDY3Q9H8M7 445 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 SYBUQ9NX95 663 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 DPP3Q9NY33 737 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 IGSF9Q9P2J2 1179 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 RIMS3Q9UJD0 308 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 DMTF1Q9Y222 760 aa8.96□□□□□ -0.98
TDP1-204ENST00000545686 BRCA1P38398 1863 aaKnown RBP8.96□□□□□ -0.98
TDP1-204ENST00000545686 LOC100653049A0A140TA62 436 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 SOWAHBA6NEL2 793 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 G3V2L1 256 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 NOP56O00567 594 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 HBP1O60381 514 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 TRIM13O60858 407 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 KRT34O76011 436 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 PIK3R1P27986 724 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 HADHAP40939 763 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 RPL34P49207 117 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 SESN2P58004 480 aaPredicted RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 CRADDP78560 199 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 RFTN1Q14699 578 aaPredicted RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 AMHR2Q16671 573 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 SLC9B1Q4ZJI4 515 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 PIGGQ5H8A4 983 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 PPM1JQ5JR12 505 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 FAM182AQ5T1J6 154 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 ARHGAP17Q68EM7 881 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 EFCAB12Q6NXP0 572 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 DCLK2Q8N568 766 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 TDRD5Q8NAT2 981 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 HIPK4Q8NE63 616 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 DDI1Q8WTU0 396 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 LRRN4Q8WUT4 740 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 IRGQQ8WZA9 623 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 SHCBP1LQ9BZQ2 653 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 RBM38Q9H0Z9 239 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 RNPEPQ9H4A4 650 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 SUDS3Q9H7L9 328 aaPredicted RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 LRRC40Q9H9A6 602 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 GGA3Q9NZ52 723 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 CIDEBQ9UHD4 219 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 HACL1Q9UJ83 578 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 CNOT11Q9UKZ1 510 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 E9PBE3 544 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 SLCO1B7G3V0H7 640 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 MATN2O00339 956 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 VILLO15195 856 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 ADCY6O43306 1168 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 TIMM44O43615 452 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 KLHL41O60662 606 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 TADA2AO75478 443 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 CRTAMO95727 393 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 EGFRP00533 1210 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 TFAP2AP05549 437 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 IQCF3P0C7M6 154 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 HSPA1LP34931 641 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 NUDT2P50583 147 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 CSE1LP55060 971 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 APOFQ13790 326 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 FLOT2Q14254 428 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 PDK1Q15118 436 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.95□□□□□ -0.98
TDP1-204ENST00000545686 SH3D19Q5HYK7 790 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 NOL9Q5SY16 702 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 CELF3Q5SZQ8 465 aaKnown RBP8.95□□□□□ -0.98
TDP1-204ENST00000545686 LBX2Q6XYB7 198 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 UNC93AQ86WB7 457 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 TRIM50Q86XT4 487 aa8.95□□□□□ -0.98
TDP1-204ENST00000545686 SCUBE3Q8IX30 993 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms