RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 PHLPP1O60346 1717 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 PSMG1O95456 288 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 SP100P23497 879 aaPredicted RBP16.46■□□□□ 0.23
VARS2-212ENST00000542001 MRPS35P82673 323 aaKnown RBP16.46■□□□□ 0.23
VARS2-212ENST00000542001 SCIMPQ6UWF3 145 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 URGCPQ8TCY9 931 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 SLC44A1Q8WWI5 657 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 KLHL5Q96PQ7 755 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 EBF4Q9BQW3 602 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 MUC3BQ9H195 1237 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 R3HDMLQ9H3Y0 253 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 CATSPERBQ9H7T0 1116 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 ACTL7BQ9Y614 415 aa16.46■□□□□ 0.23
VARS2-212ENST00000542001 TRDMT1O14717 391 aaKnown RBP16.45■□□□□ 0.22
VARS2-212ENST00000542001 RHOBTB1O94844 696 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 PSEN2P49810 448 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 DSG1Q02413 1049 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 CAPRIN1Q14444 709 aaKnown RBP16.45■□□□□ 0.22
VARS2-212ENST00000542001 GALNTL6Q49A17 601 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 RIPOR1Q6ZS17 1223 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 TMC7Q7Z402 723 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 B3GALT6Q96L58 329 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 PCYT2Q99447 389 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 ING2Q9H160 280 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 CRYBG1Q9Y4K1 1723 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 C9JVG2 144 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 LCLAT1Q6UWP7 414 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 RBM15BQ8NDT2 890 aaKnown RBP16.45■□□□□ 0.22
VARS2-212ENST00000542001 CYGBQ8WWM9 190 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 FBXO32Q969P5 355 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 PKD1L3Q7Z443 1732 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 C2CD4BA6NLJ0 364 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 MDM4O15151 490 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 TIMM44O43615 452 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 TSPAN1O60635 241 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 ODC1P11926 461 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 RAG1P15918 1043 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 CDH13P55290 713 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 PLOD1Q02809 727 aaPredicted RBP16.45■□□□□ 0.22
VARS2-212ENST00000542001 TTC30AQ86WT1 665 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 ASIC4Q96FT7 647 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 ADAM2Q99965 735 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 RHOBTB2Q9BYZ6 727 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 CDHR5Q9HBB8 845 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 FAM50BQ9Y247 325 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 COL18A1P39060 1754 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 NOS2P35228 1153 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 CRYMQ14894 314 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 IMPG1Q17R60 797 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 ERLEC1Q96DZ1 483 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 KCTD15Q96SI1 283 aaPredicted RBP16.45■□□□□ 0.22
VARS2-212ENST00000542001 NAT9Q9BTE0 207 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 VTA1Q9NP79 307 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 SIX4Q9UIU6 781 aa16.45■□□□□ 0.22
VARS2-212ENST00000542001 MYO7AQ13402 2215 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 SRRM3A6NNA2 597 aaPredicted RBP16.44■□□□□ 0.22
VARS2-212ENST00000542001 EDN1P05305 212 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 PGAM1P18669 254 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 ATN1P54259 1190 aaPredicted RBP16.44■□□□□ 0.22
VARS2-212ENST00000542001 ZNF460Q14592 562 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 SOWAHAQ2M3V2 549 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 SLC39A12Q504Y0 691 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 GPR142Q7Z601 462 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 ZBTB46Q86UZ6 589 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 SLC35B2Q8TB61 432 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 KATNAL1Q9BW62 490 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 WASF2Q9Y6W5 498 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 CYLC2Q14093 348 aaPredicted RBP16.44■□□□□ 0.22
VARS2-212ENST00000542001 NRF1Q16656 503 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 C9orf57Q5W0N0 161 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 PACS1Q6VY07 963 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 SPDYE1Q8NFV5 336 aaPredicted RBP16.44■□□□□ 0.22
VARS2-212ENST00000542001 GIPC2Q8TF65 315 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 CAMKK2Q96RR4 588 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 COPS7BQ9H9Q2 264 aaPredicted RBP16.44■□□□□ 0.22
VARS2-212ENST00000542001 CD274Q9NZQ7 290 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 CYTH4Q9UIA0 394 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 DSEQ9UL01 958 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 ARHGEF37A1IGU5 675 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 NR5A2O00482 541 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 ANXA9O76027 345 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 MT-CYBP00156 380 aaPredicted RBP16.44■□□□□ 0.22
VARS2-212ENST00000542001 CDC42EP1Q00587 391 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.44■□□□□ 0.221e-7■■■■■ 35.3
VARS2-212ENST00000542001 AGAP2Q99490 1192 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 TMEM109Q9BVC6 243 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 LHX5Q9H2C1 402 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 IRAK4Q9NWZ3 460 aa16.44■□□□□ 0.22
VARS2-212ENST00000542001 GSC2O15499 205 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 KLRC2P26717 231 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 CDH17Q12864 832 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 ACAP1Q15027 740 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 SIX1Q15475 284 aaPredicted RBP16.43■□□□□ 0.22
VARS2-212ENST00000542001 FSCN1Q16658 493 aaKnown RBP16.43■□□□□ 0.22
VARS2-212ENST00000542001 LACTB2Q53H82 288 aaPredicted RBP16.43■□□□□ 0.22
VARS2-212ENST00000542001 C6orf89Q6UWU4 347 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 WDTC1Q8N5D0 677 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 CXorf38Q8TB03 319 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 PEBP4Q96S96 227 aa16.43■□□□□ 0.22
VARS2-212ENST00000542001 SNX15Q9NRS6 342 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms