RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 MIR1-1HGQ9H1L0 117 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 PABPC3Q9H361 631 aaKnown RBP12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 NDST4Q9H3R1 872 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 OR51B4Q9Y5P0 310 aa12.21□□□□□ -0.45
CLSTN3-211ENST00000541667 A0A1B0GVT2 93 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 TARSL2A2RTX5 802 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 MEI4A8MW99 385 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 GRAP2O75791 330 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 SEMA4FO95754 770 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 SRPRAP08240 638 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 ZNF883P0CG24 379 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 TFE3P19532 575 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 ERCC5P28715 1186 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 MTIF2P46199 727 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 GALCP54803 685 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 AUHQ13825 339 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 MAN2A1Q16706 1144 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 KIF19Q2TAC6 998 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 EFHC1Q5JVL4 640 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 C11orf57Q6ZUT1 292 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 USP30Q70CQ3 517 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 RAB44Q7Z6P3 723 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 C14orf80Q86SX3 495 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 SLCO6A1Q86UG4 719 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 CIR1Q86X95 450 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 DHX40Q8IX18 779 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 CCAR2Q8N163 923 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 C1orf131Q8NDD1 294 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 ZNF397Q8NF99 534 aaPredicted RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 FRS2Q8WU20 508 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 NT5C3BQ969T7 300 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 RPL10LQ96L21 214 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 TRIM62Q9BVG3 475 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 BTBD1Q9H0C5 482 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 NEUROG2Q9H2A3 272 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 GAREM1Q9H706 876 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 SGK2Q9HBY8 427 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 TM9SF3Q9HD45 589 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 PLCB1Q9NQ66 1216 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 SAMSN1Q9NSI8 373 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 KLK13Q9UKR3 277 aa12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 FNDC3AQ9Y2H6 1198 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-211ENST00000541667 IGF2RP11717 2491 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 H0Y626 953 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 KCNK3O14649 394 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 WNT9AO14904 365 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 MID1O15344 667 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 HSF2BPO75031 334 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 APOEP02649 317 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 DNTTP04053 509 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 VAV1P15498 845 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CD27P26842 260 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CDH5P33151 784 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 GABRB2P47870 512 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 STK19P49842 368 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 VASPP50552 380 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CDK17Q00537 523 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 ECT2LQ008S8 904 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 SLC6A3Q01959 620 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 PTK2Q05397 1052 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CDH18Q13634 790 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 KCNJ12Q14500 433 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 TRIP6Q15654 476 aaKnown RBP12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CST6Q15828 149 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 KLHDC7AQ5VTJ3 777 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 ZNF776Q68DI1 518 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 UNQ6494/PRO21346Q6UXR6 183 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CLEC17AQ6ZS10 378 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 SLC26A9Q7LBE3 791 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 GLRX5Q86SX6 157 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CHSY1Q86X52 802 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 NAXDQ8IW45 347 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 ZNF683Q8IZ20 524 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 STK40Q8N2I9 435 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CHCHD4Q8N4Q1 142 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 AADATQ8N5Z0 425 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 ATP6V0D2Q8N8Y2 350 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 BAHD1Q8TBE0 780 aaPredicted RBP12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 FAM131CQ96AQ9 280 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 NPY6RQ99463 290 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 TUBGCP2Q9BSJ2 902 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 DDIT4Q9NX09 232 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 TOR4AQ9NXH8 423 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 FBXL12Q9NXK8 326 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 ADAMTS1Q9UHI8 967 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 PCOLCE2Q9UKZ9 415 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 MSRB2Q9Y3D2 182 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 NEUROG3Q9Y4Z2 214 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 SNX11Q9Y5W9 270 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 HS3ST4Q9Y661 456 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 DMXL2Q8TDJ6 3036 aa12.19□□□□□ -0.46
CLSTN3-211ENST00000541667 CHD6Q8TD26 2715 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 PLXNB3Q9ULL4 1909 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 DKK1O94907 266 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 CYP11B1P15538 503 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 PDGFRAP16234 1089 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 CCR1P32246 355 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 SLC8A1P32418 973 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 NOS2P35228 1153 aa12.18□□□□□ -0.46
CLSTN3-211ENST00000541667 CXCR3P49682 368 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms