RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 TACO1Q9BSH4 297 aaKnown RBP6.8□□□□□ -1.32
USP28-206ENST00000538224 OXCT2Q9BYC2 517 aaPredicted RBP6.8□□□□□ -1.32
USP28-206ENST00000538224 IL22Q9GZX6 179 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.8□□□□□ -1.32
USP28-206ENST00000538224 TKTL2Q9H0I9 626 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 WWP1Q9H0M0 922 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 LRMDAQ9H2I8 198 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 FBXO44Q9H4M3 255 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 STN1Q9H668 368 aaKnown RBP6.8□□□□□ -1.32
USP28-206ENST00000538224 AGO3Q9H9G7 860 aaKnown RBP6.8□□□□□ -1.32
USP28-206ENST00000538224 NPHS2Q9NP85 383 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 CASS4Q9NQ75 786 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 ARHGEF3Q9NR81 526 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 RGS18Q9NS28 235 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 MIOSQ9NXC5 875 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 ARHGEF38Q9NXL2 777 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 KCNK4Q9NYG8 393 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 ZFATQ9P243 1243 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 SLC17A7Q9P2U7 560 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 OR12D3Q9UGF7 316 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 DCDC2Q9UHG0 476 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 LNPEPQ9UIQ6 1025 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 ZFP69BQ9UJL9 534 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 GRID1Q9ULK0 1009 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 ABT1Q9ULW3 272 aaKnown RBP6.8□□□□□ -1.32
USP28-206ENST00000538224 AAR2Q9Y312 384 aaKnown RBP6.8□□□□□ -1.32
USP28-206ENST00000538224 DOCK4Q8N1I0 1966 aa6.8□□□□□ -1.32
USP28-206ENST00000538224 NYNRINQ9P2P1 1898 aaKnown RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 FAM237BA0A1B0GVD1 139 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 WDR27A2RRH5 827 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CXorf49A8MYA2 514 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 GOLGA8RI6L899 631 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SYN3O14994 580 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 H2AFYO75367 372 aaKnown RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 HAUS5O94927 633 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 ATP6V1G2O95670 118 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 GNRH1P01148 92 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 POMCP01189 267 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 APOA4P06727 396 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 EZRP15311 586 aaKnown RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 BDNFP23560 247 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CCNCP24863 283 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 GRK2P25098 689 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 MGAT1P26572 445 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CTGFP29279 349 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 EPHB2P29323 1055 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SPRP35270 261 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 MAGEA11P43364 429 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SERPINB8P50452 374 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CDK7P50613 346 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 MNAT1P51948 309 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SLC5A3P53794 718 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 GEMP55040 296 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SESN2P58004 480 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 TMPRSS15P98073 1019 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SMARCB1Q12824 385 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CDH17Q12864 832 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 NOGQ13253 232 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 MTM1Q13496 603 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 UGP2Q16851 508 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 TRIM71Q2Q1W2 868 aaKnown RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 CCDC153Q494R4 210 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 TEX44Q53QW1 395 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 NOMO2Q5JPE7 1267 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SYCP2LQ5T4T6 812 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 ICE2Q659A1 982 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 PDPK2PQ6A1A2 396 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CCSAPQ6IQ19 270 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 MSANTD2Q6P1R3 559 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 TRMT10BQ6PF06 316 aaKnown RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 SLC24A5Q71RS6 500 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 ASRGL1Q7L266 308 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 GPRIN1Q7Z2K8 1008 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 ZNF598Q86UK7 904 aaKnown RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 CRLF3Q8IUI8 442 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 NUDCD3Q8IVD9 361 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 KLHDC8BQ8IXV7 354 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 NDUFAF2Q8N183 169 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 ARHGAP24Q8N264 748 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 ZNF276Q8N554 614 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 DNAAF3Q8N9W5 541 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 STKLD1Q8NE28 680 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 CFAP61Q8NHU2 1237 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 PPP1R14CQ8TAE6 165 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 NDRG1Q92597 394 aaKnown RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 FATE1Q969F0 183 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 ISL2Q96A47 359 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 E2F7Q96AV8 911 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 TEKT5Q96M29 485 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 GLT1D1Q96MS3 346 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 FAM193BQ96PV7 902 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 KCNK16Q96T55 309 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 KLF6Q99612 283 aaPredicted RBP6.79□□□□□ -1.32
USP28-206ENST00000538224 TRPV6Q9H1D0 765 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 MYLK2Q9H1R3 596 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 PLAC1Q9HBJ0 212 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SLCO1B3Q9NPD5 702 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 SMYD2Q9NRG4 433 aa6.79□□□□□ -1.32
USP28-206ENST00000538224 OLA1Q9NTK5 396 aaKnown RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms