RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NUMA1Q14980 2115 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 PATE3B3GLJ2 98 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 SLC30A4O14863 429 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 F9P00740 461 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 C7P10643 843 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 ITPKAP23677 461 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 PLEKHG6Q3KR16 790 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 C5orf22Q49AR2 442 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 LYSMD4Q5XG99 296 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 CXorf57Q6NSI4 855 aaKnown RBP15.26■□□□□ 0.03
USP28-204ENST00000537642 SND1Q7KZF4 910 aaKnown RBP eCLIP15.26■□□□□ 0.03
USP28-204ENST00000537642 DGLUCYQ7Z3D6 616 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 CACUL1Q86Y37 369 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 SLC41A1Q8IVJ1 513 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 EMC1Q8N766 993 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 BAP1Q92560 729 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 PRCCQ92733 491 aaPredicted RBP15.26■□□□□ 0.03
USP28-204ENST00000537642 NAP1L5Q96NT1 182 aaPredicted RBP15.26■□□□□ 0.03
USP28-204ENST00000537642 AGPAT1Q99943 283 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 RTKNQ9BST9 563 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 SIK2Q9H0K1 926 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 MTG2Q9H4K7 406 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 CBX8Q9HC52 389 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 PRSS16Q9NQE7 514 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 TMPRSS4Q9NRS4 437 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 TMEM74BQ9NUR3 256 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 ERVW-1Q9UQF0 538 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 SNX10Q9Y5X0 201 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 CACNA1AO00555 2505 aa15.26■□□□□ 0.03
USP28-204ENST00000537642 DOCK4Q8N1I0 1966 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 ATXN2Q99700 1313 aaKnown RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 A0A1B0GTH6 734 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 MOCS3O95396 460 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 GJB6O95452 261 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 PDGFRAP16234 1089 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 FERP16591 822 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 MZF1P28698 734 aaPredicted RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 CD6P30203 668 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 NSFP46459 744 aaKnown RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 NUMBP49757 651 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 TPMTP51580 245 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 LIMK1P53667 647 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 ZNF33AQ06730 810 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 FILIP1LQ4L180 1135 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 ARTNQ5T4W7 220 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 PEAR1Q5VY43 1037 aaPredicted RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 ERMP1Q7Z2K6 904 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 IRF2BP2Q7Z5L9 587 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 PHF13Q86YI8 300 aaPredicted RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 SYT12Q8IV01 421 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 ZNF683Q8IZ20 524 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 OR52K2Q8NGK3 314 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 JOSD2Q8TAC2 188 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 TOE1Q96GM8 510 aaKnown RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 TMEM51Q9NW97 253 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 WSB2Q9NYS7 404 aaPredicted RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 SUN2Q9UH99 717 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 PILRBQ9UKJ0 227 aa15.25■□□□□ 0.03
USP28-204ENST00000537642 NYNRINQ9P2P1 1898 aaKnown RBP15.25■□□□□ 0.03
USP28-204ENST00000537642 A0A1W2PQC6 194 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 LNP1A1A4G5 178 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 DCDC2BA2VCK2 349 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 C2CD4BA6NLJ0 364 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 KHNYNO15037 678 aaKnown RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 NDUFS2O75306 463 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 CNTN5O94779 1100 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 ENDOD1O94919 500 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 IGLV3-19P01714 112 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 SRPRAP08240 638 aaKnown RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 ACADMP11310 421 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 RDXP35241 583 aaKnown RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 PLK1P53350 603 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 GSCP56915 257 aaPredicted RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 ST8SIA6P61647 398 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 RPS14P62263 151 aaKnown RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 IRX4P78413 519 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 ATP11AP98196 1134 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 ECT2LQ008S8 904 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 SLC12A1Q13621 1099 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 HNRNPA1L2Q32P51 320 aaKnown RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 CCDC14Q49A88 953 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 RAB6CQ53S08 254 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 LUZP1Q86V48 1076 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 FAM131BQ86XD5 332 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 KDM1BQ8NB78 822 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 RXFP2Q8WXD0 754 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 ALG14Q96F25 216 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 ZNF419Q96HQ0 510 aaPredicted RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 HSPA12BQ96MM6 686 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 SYT11Q9BT88 431 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 RAB6CQ9H0N0 254 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 FBRSQ9HAH7 460 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 SEPT11Q9NVA2 429 aaKnown RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 ADAM22Q9P0K1 906 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 EVLQ9UI08 416 aaPredicted RBP15.24■□□□□ 0.03
USP28-204ENST00000537642 SLCO3A1Q9UIG8 710 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 MYO6Q9UM54 1294 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 PAXBP1Q9Y5B6 917 aa15.24■□□□□ 0.03
USP28-204ENST00000537642 ITIH6Q6UXX5 1313 aa15.23■□□□□ 0.03
USP28-204ENST00000537642 SPTBN2O15020 2390 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms