RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SENP2Q9HC62 589 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 HMG20AQ9NP66 347 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 NAALADL1Q9UQQ1 740 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 MYH13Q9UKX3 1938 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 TBC1D12O60347 775 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 CAMTA2O94983 1202 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 OR6A2O95222 327 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 ICAM1P05362 532 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 EIF2B2P49770 351 aaKnown RBP10.85□□□□□ -0.67
CLIP1-209ENST00000537178 SLC26A2P50443 739 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 ERVK-24P63145 666 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 EPS8Q12929 822 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 CCDC157Q569K6 752 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 TRMT11Q7Z4G4 463 aaKnown RBP10.85□□□□□ -0.67
CLIP1-209ENST00000537178 ARHGEF19Q8IW93 802 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 TMEM132CQ8N3T6 1108 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 ZNF671Q8TAW3 534 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 BBS4Q96RK4 519 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 EFCAB10A6NFE3 127 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 DCDC2CA8MYV0 355 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 F8VZ95 297 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 H3BQF6 201 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 SEC22BO75396 215 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 RPN2P04844 631 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 CHRNA5P30532 468 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 TTKP33981 857 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 RCVRNP35243 200 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 SLC1A6P48664 564 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 NPY2RP49146 381 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 C21orf59P57076 290 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 C1QBPQ07021 282 aaKnown RBP10.85□□□□□ -0.67
CLIP1-209ENST00000537178 MAPK11Q15759 364 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 ZSWIM7Q19AV6 140 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 NT5DC3Q86UY8 548 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 WDR49Q8IV35 697 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 UBASH3BQ8TF42 649 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 GDPD5Q8WTR4 605 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 PHF21BQ96EK2 531 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 TMEM176AQ96HP8 235 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 NFKBIZQ9BYH8 718 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 MMADHCQ9H3L0 296 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-209ENST00000537178 TFR2Q9UP52 801 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 GUCY1B2O75343 617 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 S100A9P06702 114 aaKnown RBP10.85□□□□□ -0.67
CLIP1-209ENST00000537178 CYP2F1P24903 491 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 RPS12P25398 132 aaKnown RBP10.85□□□□□ -0.67
CLIP1-209ENST00000537178 NPTX2P47972 431 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 CDK7P50613 346 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 NEDD8Q15843 81 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 SEZ6Q53EL9 994 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 LZTR1Q8N653 840 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 LPCAT1Q8NF37 534 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 BTBD10Q9BSF8 475 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 NUAK2Q9H093 628 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 CISHQ9NSE2 258 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 TRHDEQ9UKU6 1024 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 PCDHA3Q9Y5H8 950 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 DLEC1Q9Y238 1755 aa10.85□□□□□ -0.67
CLIP1-209ENST00000537178 CCDC154A6NI56 674 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 RAMP2O60895 175 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 TNFRSF21O75509 655 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 CCT3P49368 545 aaKnown RBP10.84□□□□□ -0.67
CLIP1-209ENST00000537178 HK2P52789 917 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 MSLNQ13421 630 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-209ENST00000537178 DENND6AQ8IWF6 608 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 FAM20CQ8IXL6 584 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 ULK2Q8IYT8 1036 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 ATXN2LQ8WWM7 1075 aaKnown RBP10.84□□□□□ -0.67
CLIP1-209ENST00000537178 CAVIN3Q969G5 261 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 TEKT5Q96M29 485 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 PANX3Q96QZ0 392 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 DCUN1D5Q9BTE7 237 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 A0A088AWK7 358 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 RBAK-RBAKDNI3L0D1 243 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 KATNA1O75449 491 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 ZNF10P21506 573 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-209ENST00000537178 S100A3P33764 101 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 HNMTP50135 292 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 CLCN3P51790 818 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 HUNKP57058 714 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 SREBF2Q12772 1141 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 TBX2Q13207 712 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-209ENST00000537178 GRB10Q13322 594 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 ORC1Q13415 861 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 C2CD6Q53TS8 623 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 MILR1Q7Z6M3 343 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 ITIH5Q86UX2 942 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 USP7Q93009 1102 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 BTBD3Q9Y2F9 522 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 COQ6Q9Y2Z9 468 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 RECQL5O94762 991 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-209ENST00000537178 SNUPNO95149 360 aaKnown RBP10.84□□□□□ -0.67
CLIP1-209ENST00000537178 PCDH8O95206 1070 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 ATP6V1G2O95670 118 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 SUPT20HL2P0C7V6 817 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 FGFR1P11362 822 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 FCGRTP55899 365 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 BIKQ13323 160 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 POU6F1Q14863 301 aa10.84□□□□□ -0.67
CLIP1-209ENST00000537178 PCNX4Q63HM2 1172 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms