RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 C1QTNF9BB2RNN3 333 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 HYAL3O43820 417 aaPredicted RBP13.56□□□□□ -0.24
RTN3-207ENST00000536011 FSBPO95073 299 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 C1QTNF9P0C862 333 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 SLC9A1P19634 815 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 SPINK2P20155 84 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 CD27P26842 260 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 PON1P27169 355 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 KRT9P35527 623 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 GRIA4P48058 902 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 BPIFB4P59827 614 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 SUZ12Q15022 739 aaKnown RBP13.56□□□□□ -0.24
RTN3-207ENST00000536011 CST6Q15828 149 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 MAN2A1Q16706 1144 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 INAVAQ3KP66 663 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 RAP1GAP2Q684P5 730 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 GJB7Q6PEY0 223 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 C11orf57Q6ZUT1 292 aaPredicted RBP13.56□□□□□ -0.24
RTN3-207ENST00000536011 ADAT2Q7Z6V5 191 aaKnown RBP13.56□□□□□ -0.24
RTN3-207ENST00000536011 ZDHHC17Q8IUH5 632 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 KDF1Q8NAX2 398 aaPredicted RBP13.56□□□□□ -0.24
RTN3-207ENST00000536011 C1orf216Q8TAB5 229 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 SKA1Q96BD8 255 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 SLC2A13Q96QE2 648 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 CDC6Q99741 560 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 OMDQ99983 421 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 TM7SF3Q9NS93 570 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 FBXL12Q9NXK8 326 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 RRN3Q9NYV6 651 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 CHMP5Q9NZZ3 219 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 CYTH4Q9UIA0 394 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 FZD4Q9ULV1 537 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 ERVW-1Q9UQF0 538 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 MSRB2Q9Y3D2 182 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 ITIH6Q6UXX5 1313 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 CHD6Q8TD26 2715 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 A0A1B0GVT2 93 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 BECN2A8MW95 431 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 FLRT2O43155 660 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 SIN3BO75182 1162 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 ADH1BP00325 375 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 ELAVL3Q14576 367 aaKnown RBP13.55□□□□□ -0.24
RTN3-207ENST00000536011 HLA-BQ31612 363 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 FSCBQ5H9T9 825 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 DSG4Q86SJ6 1040 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 GLRX5Q86SX6 157 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 PASD1Q8IV76 773 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 DHX40Q8IX18 779 aaKnown RBP13.55□□□□□ -0.24
RTN3-207ENST00000536011 SETD7Q8WTS6 366 aaKnown RBP13.55□□□□□ -0.24
RTN3-207ENST00000536011 BIRC7Q96CA5 298 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 MYO19Q96H55 970 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 MRGPRX3Q96LB0 322 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 CPXM1Q96SM3 734 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 TM9SF3Q9HD45 589 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 ACP6Q9NPH0 428 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 INTS6Q9UL03 887 aaKnown RBP13.55□□□□□ -0.24
RTN3-207ENST00000536011 PAXBP1Q9Y5B6 917 aa13.55□□□□□ -0.24
RTN3-207ENST00000536011 ZZEF1O43149 2961 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 SYNJ2BP-COX16A0A087WUM0 186 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 DFNA5O60443 496 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 RNASEH2AO75792 299 aaKnown RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 CSNK1EP49674 416 aaKnown RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 C9orf64Q5T6V5 341 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 KIAA0895LQ68EN5 471 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 OR6B2Q6IFH4 312 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 MMS22LQ6ZRQ5 1243 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 SND1Q7KZF4 910 aaKnown RBP eCLIP13.54□□□□□ -0.241e-9■■■■□ 22.5
RTN3-207ENST00000536011 SLC26A9Q7LBE3 791 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 RAB44Q7Z6P3 723 aaPredicted RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 IRF2BP1Q8IU81 584 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 DEFB106AQ8N104 65 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 CCAR2Q8N163 923 aaKnown RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 MSANTD4Q8NCY6 345 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 C1orf131Q8NDD1 294 aaKnown RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 OR2T34Q8NGX1 318 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 ZCCHC14Q8WYQ9 949 aaKnown RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 GATA6Q92908 595 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 IGSF8Q969P0 613 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 MYEOVQ96EZ4 313 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 CAMK1GQ96NX5 476 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 RPRD1AQ96P16 312 aaPredicted RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 ACE2Q9BYF1 805 aaPredicted RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 PDCL3Q9H2J4 239 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 CLSTN2Q9H4D0 955 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 COX16Q9P0S2 106 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 ADAMTS1Q9UHI8 967 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 XPO7Q9UIA9 1087 aaKnown RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 DNAJC12Q9UKB3 198 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 PCOLCE2Q9UKZ9 415 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 ANKRD6Q9Y2G4 727 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 FNDC3AQ9Y2H6 1198 aaKnown RBP13.54□□□□□ -0.24
RTN3-207ENST00000536011 AKAP13Q12802 2813 aa13.54□□□□□ -0.24
RTN3-207ENST00000536011 FAM47DPA6NHR8 397 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 TTC34A8MYJ7 566 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 PES1O00541 588 aaKnown RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 MID1O15344 667 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 DAB1O75553 588 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 TOP3BO95985 862 aaKnown RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 FTH1P19P0C7X4 201 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 PDGFRAP16234 1089 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms