RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 RUBCNQ92622 972 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 LRIG1Q96JA1 1093 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 CATSPER2Q96P56 530 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 NELL2Q99435 816 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 MPHOSPH8Q99549 860 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 AIFM2Q9BRQ8 373 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 VCXQ9H320 206 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 RMND1Q9NWS8 449 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 PDP2Q9P2J9 529 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 MBD2Q9UBB5 411 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 MYO1AQ9UBC5 1043 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 PACSIN3Q9UKS6 424 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 ZMYND8Q9ULU4 1186 aaPredicted RBP5.91□□□□□ -1.46
CD44-231ENST00000531110 AGAP1Q9UPQ3 857 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 RABGAP1Q9Y3P9 1069 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 NFE2L3Q9Y4A8 694 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 SNX9Q9Y5X1 595 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 COMMD3-BMI1R4GMX3 469 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 UBN2Q6ZU65 1347 aa5.91□□□□□ -1.46
CD44-231ENST00000531110 IFT140Q96RY7 1462 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 CDK13Q14004 1512 aaKnown RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 ARPC4-TTLL3A0A0A6YYG9 625 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 M0QYG6 137 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 NDC80O14777 642 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 TRIAP1O43715 76 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 TSC22D2O75157 780 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 TACC1O75410 805 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 ESRRBO95718 433 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 SLPIP03973 132 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 CYP1A2P05177 515 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 GSTA1P08263 222 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 ATXN1LP0C7T5 689 aaKnown RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 ITGAMP11215 1152 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 ALADP13716 330 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 RHCEP18577 417 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 MX1P20591 662 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 IL10P22301 178 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 EPS15P42566 896 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 PHKA1P46020 1223 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 NPTX2P47972 431 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 MXI1P50539 228 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 MTTPP55157 894 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 UBASH3AP57075 661 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 TGFB2P61812 414 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 RHDQ02161 417 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 RELQ04864 619 aaPredicted RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 PPFIA1Q13136 1202 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 ERCC6LQ2NKX8 1250 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 KIAA0895LQ68EN5 471 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 SFRP4Q6FHJ7 346 aaPredicted RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 SWSAP1Q6NVH7 229 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 DARS2Q6PI48 645 aaKnown RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 PCSK4Q6UW60 755 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 ZNF783Q6ZMS7 281 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 EXOC3L1Q86VI1 746 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 CAND1Q86VP6 1230 aaKnown RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 PLA2G4DQ86XP0 818 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 CCDC83Q8IWF9 413 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 SCYL3Q8IZE3 742 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 FAM109AQ8N4B1 249 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 AADATQ8N5Z0 425 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 SUPT20HQ8NEM7 779 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 OR6B3Q8NGW1 331 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 WDR60Q8WVS4 1066 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 AZIN2Q96A70 460 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 SERINC2Q96SA4 455 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 PRPF18Q99633 342 aaKnown RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 FUCA2Q9BTY2 467 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 KRTAP4-11Q9BYQ6 195 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 IFIH1Q9BYX4 1025 aaKnown RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 DNAJC18Q9H819 358 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 PIH1D3Q9NQM4 214 aaKnown RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 KCTD5Q9NXV2 234 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 CPA4Q9UI42 421 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 FBXO2Q9UK22 296 aaPredicted RBP5.9□□□□□ -1.46
CD44-231ENST00000531110 ZNF711Q9Y462 761 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 ATP6V1DQ9Y5K8 247 aa5.9□□□□□ -1.46
CD44-231ENST00000531110 ZNF804BA4D1E1 1349 aa5.9□□□□□ -1.47
CD44-231ENST00000531110 FRMPD2Q68DX3 1309 aaPredicted RBP5.9□□□□□ -1.47
CD44-231ENST00000531110 WDR33Q9C0J8 1336 aaKnown RBP5.9□□□□□ -1.47
CD44-231ENST00000531110 NUP160Q12769 1436 aa5.9□□□□□ -1.47
CD44-231ENST00000531110 ZNF608Q9ULD9 1512 aaPredicted RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 A0A087WWL8 130 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 CFAP73A6NFT4 308 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 ERVV-2B6SEH9 535 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 EIF3HO15372 352 aaKnown RBP eCLIP5.89□□□□□ -1.47
CD44-231ENST00000531110 PFDN1O60925 122 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 KCNJ13O60928 360 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 TOMM70O94826 608 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 UNC5CO95185 931 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 ECDO95905 644 aaPredicted RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 GCP02774 474 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 GRPP07492 148 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 ITGALP20701 1170 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 IL32P24001 234 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 SKIV2L2P42285 1042 aaKnown RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 NDUFV1P49821 464 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 TOB1P50616 345 aaPredicted RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 THOP1P52888 689 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms