RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 TWNKQ96RR1 684 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 TUBA1CQ9BQE3 449 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 LBHD1Q9BQE6 289 aaPredicted RBP5.96□□□□□ -1.46
CD44-225ENST00000527326 TMEM79Q9BSE2 394 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 DCUN1D5Q9BTE7 237 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 MXD3Q9BW11 206 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 OSBPL11Q9BXB4 747 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 VPS11Q9H270 941 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 BLZF1Q9H2G9 400 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 TRABDQ9H4I3 376 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 TMEM206Q9H813 350 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 VPS37BQ9H9H4 285 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 SLCO1B3Q9NPD5 702 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 RNF19AQ9NV58 838 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 DNAJC17Q9NVM6 304 aaKnown RBP5.96□□□□□ -1.46
CD44-225ENST00000527326 KCNK4Q9NYG8 393 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.96□□□□□ -1.46
CD44-225ENST00000527326 EBF1Q9UH73 591 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 TBK1Q9UHD2 729 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 DBNLQ9UJU6 430 aaKnown RBP5.96□□□□□ -1.46
CD44-225ENST00000527326 SNX7Q9UNH6 387 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 NAALADL1Q9UQQ1 740 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 CAB39Q9Y376 341 aaPredicted RBP5.96□□□□□ -1.46
CD44-225ENST00000527326 TESMINQ9Y4I5 508 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 PCDHA3Q9Y5H8 950 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 HEMK1Q9Y5R4 338 aaPredicted RBP5.96□□□□□ -1.46
CD44-225ENST00000527326 DCCP43146 1447 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 NCANO14594 1321 aa5.96□□□□□ -1.46
CD44-225ENST00000527326 A0A0G2JND7 137 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ESYT2A0FGR8 921 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ISPDA4D126 451 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ATP6V1G2-DDX39BF2Z307 99 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 F8W810 466 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 H3BMQ9 156 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 J3QRK9 145 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 hCG_2039718K7EN88 272 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ZBTB39O15060 712 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 TM9SF1O15321 606 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 DYNC1LI2O43237 492 aaPredicted RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 ZBTB43O43298 467 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 MAFO75444 373 aaPredicted RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 MICAL2O94851 1124 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 CSPG5O95196 566 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 DEXIO95424 95 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ACSL3O95573 720 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ECDO95905 644 aaPredicted RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 BCL10O95999 233 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 CD4P01730 458 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RGPD1P0DJD0 1748 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 CDH1P12830 882 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 KRT13P13646 458 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 SELPP16109 830 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ATF3P18847 181 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 IMPDH1P20839 514 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 CTNNA2P26232 953 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 HSD17B2P37059 387 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 HPCAL1P37235 193 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 TALDO1P37837 337 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 PRKCIP41743 596 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 NR4A2P43354 598 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 OR3A3P47888 321 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RCAN1P53805 252 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 TMBIM6P55061 237 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ANTXR2P58335 489 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 SSTP61278 116 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 COPZ1P61923 177 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 POLR2GP62487 172 aaKnown RBP eCLIP5.95□□□□□ -1.46
CD44-225ENST00000527326 MRPS15P82914 257 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 ATP2C1P98194 919 aaPredicted RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 GALK2Q01415 458 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 GHRHRQ02643 423 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 KRT17Q04695 432 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RIPPLY1Q0D2K3 151 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 GRSF1Q12849 480 aaKnown RBP eCLIP5.95□□□□□ -1.46
CD44-225ENST00000527326 TMED2Q15363 201 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 MAPRE1Q15691 268 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 DLG2Q15700 870 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 NTRK3Q16288 839 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 HLFQ16534 295 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 CYP1B1Q16678 543 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 AASDHQ4L235 1098 aaPredicted RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 FAM47CQ5HY64 1035 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 AARS2Q5JTZ9 985 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 C9orf131Q5VYM1 1079 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 TTBK2Q6IQ55 1244 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 EDC4Q6P2E9 1401 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 GALNT18Q6P9A2 607 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 PGM2L1Q6PCE3 622 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 CCDC137Q6PK04 289 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 XKR5Q6UX68 686 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RNF111Q6ZNA4 994 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ZNF704Q6ZNC4 412 aaPredicted RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 PLEKHG7Q6ZR37 379 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 PRR23BQ6ZRT6 265 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RFX8Q6ZV50 586 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 C10orf71Q711Q0 1435 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 FAM83AQ86UY5 434 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 LACC1Q8IV20 430 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 HERC6Q8IVU3 1022 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RAVER1Q8IY67 606 aaKnown RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms