RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 WASF3Q9UPY6 502 aa10.51□□□□□ -0.73
VPS28-204ENST00000526054 SPEGQ15772 3267 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 TMCO5BA8MYB1 307 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 GFRA2O00451 464 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 DDX3XO00571 662 aaKnown RBP eCLIP10.5□□□□□ -0.736e-7■■□□□ 12.4
VPS28-204ENST00000526054 OPHN1O60890 802 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 RTN2O75298 545 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 TRUB2O95900 331 aaKnown RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 TOP3BO95985 862 aaKnown RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 PENKP01210 267 aaPredicted RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 CISD3P0C7P0 127 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 CORO1AP31146 461 aaKnown RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 NOS2P35228 1153 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 CHKAP35790 457 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 MATKP42679 507 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 ADKP55263 362 aaKnown RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 RNASE9P60153 205 aaKnown RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 TBX2Q13207 712 aaPredicted RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 SEMA3BQ13214 749 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 SYPL2Q5VXT5 272 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 DNAJC24Q6P3W2 148 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 ARCQ7LC44 396 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 UNC45BQ8IWX7 931 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 RGL4Q8IZJ4 473 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 MCOLN2Q8IZK6 566 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 MINDY1Q8N5J2 469 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 C3orf20Q8ND61 904 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 ANP32BQ92688 251 aaKnown RBP10.5□□□□□ -0.73
VPS28-204ENST00000526054 VCPIP1Q96JH7 1222 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 DEF6Q9H4E7 631 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 TMEM51Q9NW97 253 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 SUSD2Q9UGT4 822 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 ZMIZ1Q9ULJ6 1067 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 TLR6Q9Y2C9 796 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 SLC27A6Q9Y2P4 619 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 STON1Q9Y6Q2 735 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 IGF2RP11717 2491 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 CKAP5Q14008 2032 aa10.5□□□□□ -0.73
VPS28-204ENST00000526054 CACNA1EQ15878 2313 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 SPAARA0A1B0GVQ0 90 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 SSU72P8A0A1W2PR75 194 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 ANKRD62A6NC57 917 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 TMEM8BA6NDV4 472 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 MEI4A8MW99 385 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 GOLGA6L6A8MZA4 724 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 UPK3BL1B0FP48 263 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 WASH3PC4AMC7 463 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 UPK3BL2E5RIL1 263 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 ARHGAP33O14559 1287 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 IRAK2O43187 625 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 HYAL3O43820 417 aaPredicted RBP10.49□□□□□ -0.73
VPS28-204ENST00000526054 LATS1O95835 1130 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 IGLV3-25P01717 112 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 IGLV3-27P01718 113 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 APOEP02649 317 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 KLKB1P03952 638 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 CYBBP04839 570 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 SYPP08247 313 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 PLEKP08567 350 aaPredicted RBP10.49□□□□□ -0.73
VPS28-204ENST00000526054 MYBL1P10243 752 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 SLC2A3P11169 496 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 KRT3P12035 628 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 DESP17661 470 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 CDC25BP30305 580 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 EIF4A3P38919 411 aaKnown RBP10.49□□□□□ -0.73
VPS28-204ENST00000526054 SULT1E1P49888 294 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 SIM1P81133 766 aaPredicted RBP10.49□□□□□ -0.73
VPS28-204ENST00000526054 PTP4A2Q12974 167 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 MTA1Q13330 715 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 GEN1Q17RS7 908 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 PLEKHG6Q3KR16 790 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 FUT11Q495W5 492 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 SYCP2LQ5T4T6 812 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 FYB2Q5VWT5 728 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 SND1Q7KZF4 910 aaKnown RBP eCLIP10.49□□□□□ -0.73
VPS28-204ENST00000526054 ANKS1BQ7Z6G8 1248 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 PIP4P1Q86T03 277 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 DENND1CQ8IV53 801 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 OR2I1PQ8NGU4 316 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 ADAM32Q8TC27 787 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 UCMAQ8WVF2 138 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 FOXJ1Q92949 421 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 P2RY11Q96G91 374 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 TMEM121BQ9BXQ6 578 aaPredicted RBP10.49□□□□□ -0.73
VPS28-204ENST00000526054 PRDM16Q9HAZ2 1276 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 DDIT4Q9NX09 232 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 TAS2R14Q9NYV8 317 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 ARHGAP20Q9P2F6 1191 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 ADAMTS1Q9UHI8 967 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 TMEM59LQ9UK28 342 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 PAXBP1Q9Y5B6 917 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 AKAP13Q12802 2813 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 ZFYVE26Q68DK2 2539 aa10.49□□□□□ -0.73
VPS28-204ENST00000526054 MUC22E2RYF6 1773 aaPredicted RBP10.49□□□□□ -0.73
VPS28-204ENST00000526054 SYNJ2BP-COX16A0A087WUM0 186 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 M0QYT0 321 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 NPC1O15118 1278 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 AKR1B10O60218 316 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 ADCY5O95622 1261 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 F9P00740 461 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms