RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 CPED1A4D0V7 1026 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 TBC1D3FA6NER0 549 aaPredicted RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 TBC1D3LB9A6J9 549 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 K7ESM1 405 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 PRPF6O94906 941 aaKnown RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 TBC1D3HP0C7X1 549 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 PABPC1P11940 636 aaKnown RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 PDIA4P13667 645 aaKnown RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 GOT1P17174 413 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 MLLT3P42568 568 aaPredicted RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 PSMD8P48556 350 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 MYL6P60660 151 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 NUCB2P80303 420 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 PDE4CQ08493 712 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 GNL2Q13823 731 aaKnown RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 MORC3Q14149 939 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 CDKN3Q16667 212 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 HNRNPA1L2Q32P51 320 aaKnown RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 PERM1Q5SV97 790 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 TBC1D3GQ6DHY5 549 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 TBC1D3CQ6IPX1 549 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 RBM44Q6ZP01 1051 aaKnown RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 TBC1D3Q8IZP1 549 aaPredicted RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 GPD1LQ8N335 351 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 GRAMD1AQ96CP6 724 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 LMLNQ96KR4 655 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 MRGPRX3Q96LB0 322 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 DCLK3Q9C098 648 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 ZSCAN16Q9H4T2 348 aaPredicted RBP9.5□□□□□ -0.89
NUP54-211ENST00000512151 KLHL11Q9NVR0 708 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 CHMP5Q9NZZ3 219 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 SEL1LQ9UBV2 794 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 HMGXB4Q9UGU5 601 aa9.5□□□□□ -0.89
NUP54-211ENST00000512151 SETD2Q9BYW2 2564 aaPredicted RBP9.49□□□□□ -0.89
NUP54-211ENST00000512151 F8P00451 2351 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 CSMD1Q96PZ7 3565 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 CCDC187A0A096LP49 1063 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 TTC34A8MYJ7 566 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 HGFP14210 728 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 COL8A1P27658 744 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 DRD3P35462 400 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 COG7P83436 770 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 KCNMA1Q12791 1236 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 SFSWAPQ12872 951 aaKnown RBP9.49□□□□□ -0.89
NUP54-211ENST00000512151 OVGP1Q12889 678 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 HS1BP3Q53T59 392 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 ZNF542PQ5EBM4 170 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 SCARA5Q6ZMJ2 495 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 CLEC20AQ6ZU45 233 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 EFL1Q7Z2Z2 1120 aaKnown RBP9.49□□□□□ -0.89
NUP54-211ENST00000512151 BRAPQ7Z569 592 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 C14orf80Q86SX3 495 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 WDR49Q8IV35 697 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 AHI1Q8N157 1196 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 C12orf29Q8N999 325 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 ZNF516Q92618 1163 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 MIB2Q96AX9 1013 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 KLHDC7BQ96G42 594 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 USP28Q96RU2 1077 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 MYOCQ99972 504 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 ZNF768Q9H5H4 540 aaKnown RBP9.49□□□□□ -0.89
NUP54-211ENST00000512151 MRPL44Q9H9J2 332 aaKnown RBP9.49□□□□□ -0.89
NUP54-211ENST00000512151 FAM49BQ9NUQ9 324 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 TFIP11Q9UBB9 837 aaKnown RBP9.49□□□□□ -0.89
NUP54-211ENST00000512151 ACSL6Q9UKU0 697 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 EXOC7Q9UPT5 735 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 PCDHGA7Q9Y5G6 932 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 CLIC4Q9Y696 253 aa9.49□□□□□ -0.89
NUP54-211ENST00000512151 NYNRINQ9P2P1 1898 aaKnown RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 SCN8AQ9UQD0 1980 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 SLC12A8A0AV02 714 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 SCAMP1O15126 338 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 ATP5BP06576 529 aaKnown RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 ADORA2BP29275 332 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 UGT1A5P35504 534 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 CTSOP43234 321 aaPredicted RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 UQCRFS1P47985 274 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 HARS2P49590 506 aaKnown RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 KIF11P52732 1056 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 DNM1Q05193 864 aaKnown RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 KCNAB2Q13303 367 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 ZNF177Q13360 481 aaPredicted RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 STAT4Q14765 748 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 MPPE1Q53F39 396 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 RILPL1Q5EBL4 403 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 SND1Q7KZF4 910 aaKnown RBP eCLIP9.48□□□□□ -0.89
NUP54-211ENST00000512151 B3GNT8Q7Z7M8 397 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 PRPF39Q86UA1 669 aaKnown RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 JAMLQ86YT9 394 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 STK40Q8N2I9 435 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 ZNF276Q8N554 614 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 RDH13Q8NBN7 331 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 TMEM145Q8NBT3 493 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 NOX5Q96PH1 765 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 ADNPQ9H2P0 1102 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 USP29Q9HBJ7 922 aa9.48□□□□□ -0.89
NUP54-211ENST00000512151 INTS6Q9UL03 887 aaKnown RBP9.48□□□□□ -0.89
NUP54-211ENST00000512151 A1L4Q6 167 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms