RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 AGAP11Q8TF27 550 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 APBA2Q99767 749 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 TMEM114B3SHH9 223 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 DUSP28Q4G0W2 176 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 SNX30Q5VWJ9 437 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 PIK3R5Q8WYR1 880 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 PTCH2Q9Y6C5 1203 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 MDM4O15151 490 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 TPBGLP0DKB5 382 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 GABRB2P47870 512 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 HIRAP54198 1017 aaPredicted RBP11□□□□□ -0.65
LIMCH1-205ENST00000503057 LRRC74BQ6ZQY2 392 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 TFAP2BQ92481 460 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 SH3GL3Q99963 347 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 TBC1D10AQ9BXI6 508 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 CYP4F12Q9HCS2 524 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 CYLDQ9NQC7 956 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 FETUBQ9UGM5 382 aa11□□□□□ -0.65
LIMCH1-205ENST00000503057 TSPAN1O60635 241 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 MAP1SQ66K74 1059 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 LAYNQ6UX15 382 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 LRRC43Q8N309 656 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 TUBGCP3Q96CW5 907 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 GAD1Q99259 594 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 LRCH1Q9Y2L9 728 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 ARAP2Q8WZ64 1704 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 A0A0G2JLL6 359 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 AVILO75366 819 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 CSPG5O95196 566 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 VAPBO95292 243 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 PSMG1O95456 288 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 BDNFP23560 247 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 CSE1LP55060 971 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 BST1Q10588 318 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 ELAVL2Q12926 359 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC39A4Q6P5W5 647 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 NET1Q7Z628 596 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 PRRT2Q7Z6L0 340 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 HOMEZQ8IX15 550 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 RIN3Q8TB24 985 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 FZD8Q9H461 694 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 SLCO1B3Q9NPD5 702 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 KIF17Q9P2E2 1029 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 CACNA1SQ13698 1873 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 C5orf60A6NFR6 353 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 MEI4A8MW99 385 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 H0Y626 953 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 UBDO15205 165 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 MYL4P12829 197 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 MLNP12872 115 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 PSMA4P25789 261 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 RPL9P32969 192 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 ALDH7A1P49419 539 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 PTK2BQ14289 1009 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF470Q6ECI4 717 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 PTAR1Q7Z6K3 402 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 RNPEPQ9H4A4 650 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 LATS2Q9NRM7 1088 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 SH3BP1Q9Y3L3 701 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 RAMP2O60895 175 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 RTN3O95197 1032 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 HK2P52789 917 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 BEX3Q00994 111 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 WASHC5Q12768 1159 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 C16orf46Q6P387 395 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 PLD5Q8N7P1 536 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 CRYGNQ8WXF5 182 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 GFM2Q969S9 779 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 A0A1B0GUL6 1792 aa10.99□□□□□ -0.65
LIMCH1-205ENST00000503057 TMEM247A6NEH6 219 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 GPR25O00155 361 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 ALDH1A1P00352 501 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CRADDP78560 199 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SH3D19Q5HYK7 790 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SPDYAQ5MJ70 313 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 GJC2Q5T442 439 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 PRDM12Q9H4Q4 367 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 IL1RL2Q9HB29 575 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 TUBGCP4Q9UGJ1 667 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF180Q9UJW8 692 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 TUBGCP6Q96RT7 1819 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 USP12O75317 370 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 ITGA2BP08514 1039 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 HOXB8P17481 243 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 RPL14P50914 215 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 MAP2K5Q13163 448 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 TMED1Q13445 227 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 LRRC8BQ6P9F7 803 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 UNC5AQ6ZN44 842 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 MFN1Q8IWA4 741 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF555Q8NEP9 628 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 RDH11Q8TC12 318 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CATSPER2Q96P56 530 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 ADGRE3Q9BY15 652 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CNGB3Q9NQW8 809 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 NDUFA13Q9P0J0 144 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC17A7Q9P2U7 560 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 WARS2Q9UGM6 360 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 FAM95CA0A1B0GW59 222 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SERPINA6P08185 405 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms