RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	TMEM191B	P0C7N4	346 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	PMS1	P54277	932 aa	Known RBP	11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	UBE3A	Q05086	875 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	RALGDS	Q12967	914 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	SSPN	Q14714	243 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	OASL	Q15646	514 aa	Known RBP	11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	UPP1	Q16831	310 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	GRAMD1B	Q3KR37	738 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	VWA3B	Q502W6	1294 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	OR7E24	Q6IFN5	339 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	FAM180B	Q6P0A1	224 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	C4orf22	Q6V702	233 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	BBS5	Q8N3I7	341 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	TTL	Q8NG68	377 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	MYCBPAP	Q8TBZ2	947 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	AUTS2	Q8WXX7	1259 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	RELT	Q969Z4	430 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	CNDP1	Q96KN2	507 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	B3GALT6	Q96L58	329 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	TBATA	Q96M53	351 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	CTRC	Q99895	268 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	VN1R3	Q9BXE9	311 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	LMAN2L	Q9H0V9	348 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	STMN4	Q9H169	189 aa	Predicted RBP	11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	ARNT2	Q9HBZ2	717 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	ENAM	Q9NRM1	1142 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	SAMD15	Q9P1V8	674 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	TNFRSF10D	Q9UBN6	386 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	MALT1	Q9UDY8	824 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	RABGEF1	Q9UJ41	708 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	MYO7A	Q13402	2215 aa		11.91	□□□□□ -0.5
BRCA1-222	ENST00000493919	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.91	□□□□□ -0.5	1e-9	■■■■■ 99.9
BRCA1-222	ENST00000493919		I3L4J1	428 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	C2CD2L	O14523	706 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	KPNA5	O15131	536 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	SNX4	O95219	450 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	TNNI1	P19237	187 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	IGFBP6	P24592	240 aa	Predicted RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	PPP1R2	P41236	205 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	HSPA13	P48723	471 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	STX17	P56962	302 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	ERVFC1	P60507	584 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	TAGLN	Q01995	201 aa	Known RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	TYRO3	Q06418	890 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	CYP24A1	Q07973	514 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	PAK1	Q13153	545 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	CAMK1	Q14012	370 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	TIGD5	Q53EQ6	642 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	DDX53	Q86TM3	631 aa	Known RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	AKAP14	Q86UN6	197 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	STK32C	Q86UX6	486 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	NUP93	Q8N1F7	819 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	OR10Z1	Q8NGY1	313 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	PTCD2	Q8WV60	388 aa	Known RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	NELFB	Q8WX92	580 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	C11orf24	Q96F05	449 aa	Predicted RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	SLC47A1	Q96FL8	570 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	CCT8L2	Q96SF2	557 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	MNT	Q99583	582 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	INTS2	Q9H0H0	1204 aa	Known RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	UCK1	Q9HA47	277 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	ATP13A1	Q9HD20	1204 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	HPS4	Q9NQG7	708 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	ETNK2	Q9NVF9	386 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	KLHL3	Q9UH77	587 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	SOX13	Q9UN79	622 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	DERA	Q9Y315	318 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	PTPRJ	Q12913	1337 aa		11.9	□□□□□ -0.5
BRCA1-222	ENST00000493919	ANO9	A1A5B4	782 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	UROD	P06132	367 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	KRT19	P08727	400 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	HPGD	P15428	266 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	BRCC3	P46736	316 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	CYP4F2	P78329	520 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	ACY1	Q03154	408 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	LRRC63	Q05C16	580 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	CYP4F3	Q08477	520 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	KPNB1	Q14974	876 aa	Known RBP	11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	ZBTB6	Q15916	424 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	GSTA3	Q16772	222 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	DPCR1	Q3MIW9	517 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	FYB2	Q5VWT5	728 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	CENPP	Q6IPU0	288 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	DRICH1	Q6PGQ1	229 aa	Predicted RBP	11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	KDM7A	Q6ZMT4	941 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	SLC9A9	Q8IVB4	645 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	PLEKHO2	Q8TD55	490 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	THAP11	Q96EK4	314 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	TSNARE1	Q96NA8	513 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	RPRD1A	Q96P16	312 aa	Predicted RBP	11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	GPR62	Q9BZJ7	368 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	ZBP1	Q9H171	429 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	EPB41L1	Q9H4G0	881 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	DPP3	Q9NY33	737 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	TRPM5	Q9NZQ8	1165 aa		11.9	□□□□□ -0.51
BRCA1-222	ENST00000493919	LRCH1	Q9Y2L9	728 aa		11.9	□□□□□ -0.51

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