RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GCNAQ96QF7 691 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 APBA2Q99767 749 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PSMC3IPQ9P2W1 217 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TDRKHQ9Y2W6 561 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TRIM49D1C9J1S8 452 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 KBTBD13C9JR72 458 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LIASO43766 372 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SEC24DO94855 1032 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SPATA31D3P0C874 917 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PCSK1P29120 753 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CST9Q5W186 159 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PLEKHA7Q6IQ23 1121 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SPATA31D4Q6ZUB0 917 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TTC30AQ86WT1 665 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SHCBP1Q8NEM2 672 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ST13P5Q8NFI4 369 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GDPD5Q8WTR4 605 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EME1Q96AY2 570 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF669Q96BR6 464 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TMEM120AQ9BXJ8 343 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CYP3A43Q9HB55 503 aa11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SARS2Q9NP81 518 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TUBA8Q9NY65 449 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 F8W810 466 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 KRT37O76014 449 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANPEPP15144 967 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ALOX15P16050 662 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EDNRBP24530 442 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MAP4P27816 1152 aaKnown RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 AVPR1AP37288 418 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LILRA4P59901 499 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 YWHAHQ04917 246 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 OLIG2Q13516 323 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MYBPC3Q14896 1274 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SOWAHAQ2M3V2 549 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 KLHL38Q2WGJ6 581 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DEFB115Q30KQ5 88 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LDLRAD1Q5T700 205 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GDF6Q6KF10 455 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PYDC1Q8WXC3 89 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MS4A4AQ96JQ5 239 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 STXBP5LQ9Y2K9 1186 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 hCG_1818297A0A087WSY0 165 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FCHO1O14526 889 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PAPSS1O43252 624 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MAN1A2O60476 641 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FAM155BO75949 473 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CYP1A1P04798 512 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HOXD10P28358 340 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TYK2P29597 1187 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GLRBP48167 497 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MRPS6P82932 125 aaKnown RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 OCRLQ01968 901 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SOX4Q06945 474 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EMC10Q5UCC4 262 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 IFNL1Q8IU54 200 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PPIL6Q8IXY8 311 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCNYL1Q8N7R7 359 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SCAMP5Q8TAC9 235 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SKA2Q8WVK7 121 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SCLYQ96I15 445 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DEFB118Q96PH6 123 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCDC134Q9H6E4 229 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PDLIM7Q9NR12 457 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EURLQ9NYK6 297 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 STX18Q9P2W9 335 aaKnown RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF229Q9UJW7 825 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 WDR37Q9Y2I8 494 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MFHAS1Q9Y4C4 1052 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MYH9P35579 1960 aaKnown RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 C9IYK1 514 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FSCN2O14926 492 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PAX3P23760 479 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ATICP31939 592 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CHN2P52757 468 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NUP107P57740 925 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GJA9P57773 515 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PDK3Q15120 406 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CTXN3Q4LDR2 81 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EFHC1Q5JVL4 640 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TAF2Q6P1X5 1199 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 KATNAL2Q8IYT4 538 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZBTB8BQ8NAP8 495 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 OR6Y1Q8NGX8 325 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SPOCK2Q92563 424 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NRBF2Q96F24 287 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SPATA17Q96L03 361 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCDC138Q96M89 665 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 XYLT2Q9H1B5 865 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RPS6KL1Q9Y6S9 549 aa11□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 COL11A2P13942 1736 aaPredicted RBP10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RPL17P18621 184 aaKnown RBP10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GRM5P41594 1212 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MTA1Q13330 715 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ITGA7Q13683 1181 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NDUFAF2Q8N183 169 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCDC185Q8N715 623 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PAFAH2Q99487 392 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TKTL2Q9H0I9 626 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC38A7Q9NVC3 462 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms