RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ELAVL3Q14576 367 aaKnown RBP11.98□□□□□ -0.49
COL6A3-213ENST00000493475 CST6Q15828 149 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 HS1BP3Q53T59 392 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 MS4A13Q5J8X5 152 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 PITRM1Q5JRX3 1037 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 FAM46CQ5VWP2 391 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 SMYD5Q6GMV2 418 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 DBX2Q6ZNG2 339 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 TMPRSS7Q7RTY8 843 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 SCUBE3Q8IX30 993 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 UBR7Q8N806 425 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 DQX1Q8TE96 717 aaKnown RBP11.98□□□□□ -0.49
COL6A3-213ENST00000493475 TFAP2BQ92481 460 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 RNF25Q96BH1 459 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-213ENST00000493475 FAM204AQ9H8W3 233 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 IL21RQ9HBE5 538 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 GDF3Q9NR23 364 aa11.98□□□□□ -0.49
COL6A3-213ENST00000493475 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.98□□□□□ -0.49
COL6A3-213ENST00000493475 ZFYVE26Q68DK2 2539 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 A0A1W2PPC4 97 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 THAP12O43422 761 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 SIN3BO75182 1162 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 ITGAVP06756 1048 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 CCR1P32246 355 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 SLC8A1P32418 973 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 CCR5P51681 352 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 PMS1P54277 932 aaKnown RBP11.97□□□□□ -0.49
COL6A3-213ENST00000493475 YWHAZP63104 245 aaKnown RBP11.97□□□□□ -0.49
COL6A3-213ENST00000493475 CDK17Q00537 523 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 PAK1Q13153 545 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 FAM133BQ5BKY9 247 aaKnown RBP11.97□□□□□ -0.49
COL6A3-213ENST00000493475 RRAGAQ7L523 313 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 MMAAQ8IVH4 418 aaKnown RBP11.97□□□□□ -0.49
COL6A3-213ENST00000493475 DHX40Q8IX18 779 aaKnown RBP11.97□□□□□ -0.49
COL6A3-213ENST00000493475 LGI2Q8N0V4 545 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 EHBP1Q8NDI1 1231 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 C1orf216Q8TAB5 229 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 BAHD1Q8TBE0 780 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-213ENST00000493475 NELFBQ8WX92 580 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 P2RY11Q96G91 374 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 CCDC114Q96M63 670 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 KDM4CQ9H3R0 1056 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 THAP9Q9H5L6 903 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 SYNCQ9H7C4 482 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 ADAMTS1Q9UHI8 967 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 SLC25A13Q9UJS0 675 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 ERVW-1Q9UQF0 538 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 PAXBP1Q9Y5B6 917 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 ZZEF1O43149 2961 aa11.97□□□□□ -0.49
COL6A3-213ENST00000493475 AKAP13Q12802 2813 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 ADAMTS9Q9P2N4 1935 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 GOLGA6L7A0A1B0GV03 622 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 A0A1W2PP55 124 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 C1QTNF3-AMACRE9PGA6 284 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 SLC7A4O43246 635 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 LETM1O95202 739 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 IL1BP01584 269 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 GLI1P08151 1106 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 C1SP09871 688 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 PRKCSHP14314 528 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 GOT1P17174 413 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 CD38P28907 300 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 GNA15P30679 374 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 SLC6A4P31645 630 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 CTSKP43235 329 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 SGSHP51688 502 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 RPS24P62847 133 aaKnown RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 KCNH2Q12809 1159 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 ACAP1Q15027 740 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 CCDC157Q569K6 752 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 DCAF6Q58WW2 860 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 EFHC1Q5JVL4 640 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 NCEH1Q6PIU2 408 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 PRPF39Q86UA1 669 aaKnown RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 TMPRSS12Q86WS5 348 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 OR14C36Q8NHC7 312 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 FCRL2Q96LA5 508 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 SPAG5Q96R06 1193 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 ELF4Q99607 663 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 INTS2Q9H0H0 1204 aaKnown RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 UBE2TQ9NPD8 197 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-213ENST00000493475 DKK4Q9UBT3 224 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 NAALADL1Q9UQQ1 740 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 PCDHGA1Q9Y5H4 931 aa11.96□□□□□ -0.49
COL6A3-213ENST00000493475 CKAP5Q14008 2032 aa11.96□□□□□ -0.5
COL6A3-213ENST00000493475 ITIH6Q6UXX5 1313 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 TBC1D3DA0A087WVF3 549 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 TBC1D3IA0A087WXS9 549 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 TBC1D3EA0A087X179 549 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 TBC1D3KA0A087X1G2 549 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 A0A1B0GTQ1 180 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 A0A1B0GVM2 712 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 TBC1D3FA6NER0 549 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-213ENST00000493475 TCAF2A6NFQ2 919 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 KCNU1A8MYU2 1149 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 TBC1D3LB9A6J9 549 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 H0Y8X5 98 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 MID1O15344 667 aa11.95□□□□□ -0.5
COL6A3-213ENST00000493475 PAPSS1O43252 624 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-213ENST00000493475 HSF2BPO75031 334 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms