RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 KIAA1522Q9P206 1035 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-214ENST00000490398 SLCO3A1Q9UIG8 710 aa18.7■□□□□ 0.58
COL9A3-214ENST00000490398 PLA2G4CQ9UP65 541 aa18.7■□□□□ 0.58
COL9A3-214ENST00000490398 A0A1B0GVM2 712 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 TCAF2A6NFQ2 919 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 TMCO5BA8MYB1 307 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 PATE3B3GLJ2 98 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 SYNCRIPO60506 623 aaKnown RBP18.69■□□□□ 0.58
COL9A3-214ENST00000490398 LRP3O75074 770 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 PTMSP20962 102 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 RDXP35241 583 aaKnown RBP18.69■□□□□ 0.58
COL9A3-214ENST00000490398 ID4P47928 161 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 STK19P49842 368 aaPredicted RBP18.69■□□□□ 0.58
COL9A3-214ENST00000490398 CAMK2GQ13555 558 aaPredicted RBP18.69■□□□□ 0.58
COL9A3-214ENST00000490398 C5orf22Q49AR2 442 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 RABGAP1LQ5R372 815 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 ARCQ7LC44 396 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 ZNF571Q7Z3V5 609 aaPredicted RBP18.69■□□□□ 0.58
COL9A3-214ENST00000490398 ALG14Q96F25 216 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 RPL10LQ96L21 214 aaKnown RBP18.69■□□□□ 0.58
COL9A3-214ENST00000490398 MYO6Q9UM54 1294 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 ERVW-1Q9UQF0 538 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 PCDHGA5Q9Y5G8 931 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 ATXN2Q99700 1313 aaKnown RBP18.69■□□□□ 0.58
COL9A3-214ENST00000490398 SPAG17Q6Q759 2223 aa18.69■□□□□ 0.58
COL9A3-214ENST00000490398 TTC34A8MYJ7 566 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 CAVIN2O95810 425 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 F9P00740 461 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 ATP5BP06576 529 aaKnown RBP18.68■□□□□ 0.58
COL9A3-214ENST00000490398 ZNF806P0C7X5 589 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 SKILP12757 684 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 GSCP56915 257 aaPredicted RBP18.68■□□□□ 0.58
COL9A3-214ENST00000490398 ASIC2Q16515 512 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 ACAD10Q6JQN1 1059 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 WDR59Q6PJI9 974 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 LPCAT2Q7L5N7 544 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 C11orf74Q86VG3 221 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 SLC41A1Q8IVJ1 513 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 GPR161Q8N6U8 529 aaKnown RBP18.68■□□□□ 0.58
COL9A3-214ENST00000490398 ZNF557Q8N988 423 aaPredicted RBP18.68■□□□□ 0.58
COL9A3-214ENST00000490398 OR2T3Q8NH03 318 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 SIPA1Q96FS4 1042 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 HAUS4Q9H6D7 363 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 ITM2CQ9NQX7 267 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 MPP6Q9NZW5 540 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 USP36Q9P275 1121 aaKnown RBP18.68■□□□□ 0.58
COL9A3-214ENST00000490398 OR51B4Q9Y5P0 310 aa18.68■□□□□ 0.58
COL9A3-214ENST00000490398 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-214ENST00000490398 DRGXA6NNA5 263 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 SIN3BO75182 1162 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 KRT3P12035 628 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 TNFAIP3P21580 790 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 ITPKAP23677 461 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 RRM1P23921 792 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 HDAC4P56524 1084 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 UBASH3AP57075 661 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 RPL7AP62424 266 aaKnown RBP18.67■□□□□ 0.58
COL9A3-214ENST00000490398 RPL6Q02878 288 aaKnown RBP18.67■□□□□ 0.58
COL9A3-214ENST00000490398 LMNB2Q03252 620 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 C1QBPQ07021 282 aaKnown RBP18.67■□□□□ 0.58
COL9A3-214ENST00000490398 SKOR2Q2VWA4 1001 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-214ENST00000490398 PPP1R15BQ5SWA1 713 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 SND1Q7KZF4 910 aaKnown RBP eCLIP18.67■□□□□ 0.581e-31■■□□□ 13.7
COL9A3-214ENST00000490398 CCDC117Q8IWD4 279 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-214ENST00000490398 MCOLN2Q8IZK6 566 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 C3orf20Q8ND61 904 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 PIGKQ92643 395 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 CENPIQ92674 756 aaPredicted RBP18.67■□□□□ 0.58
COL9A3-214ENST00000490398 VPS45Q9NRW7 570 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 DLL3Q9NYJ7 618 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 AIPL1Q9NZN9 384 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 IFNKQ9P0W0 207 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 CKAP5Q14008 2032 aa18.67■□□□□ 0.58
COL9A3-214ENST00000490398 E9PAM4 449 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 DDX3XO00571 662 aaKnown RBP eCLIP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 ZBTB24O43167 697 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 ATMINO43313 823 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 SRGAP2O75044 1071 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 ZNF217O75362 1048 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 ASLP04424 464 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 CALB1P05937 261 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 VAV1P15498 845 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 SDC4P31431 198 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 TPMTP51580 245 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 PLK1P53350 603 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 RPS14P62263 151 aaKnown RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 ECT2LQ008S8 904 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 OGDHQ02218 1023 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 BYSLQ13895 437 aaKnown RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 TTC39BQ5VTQ0 682 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 SFMBT2Q5VUG0 894 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 CYP2U1Q7Z449 544 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 METTL3Q86U44 580 aaKnown RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 CCDC185Q8N715 623 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 FAM172AQ8WUF8 416 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 PRCCQ92733 491 aaPredicted RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 TOE1Q96GM8 510 aaKnown RBP18.66■□□□□ 0.58
COL9A3-214ENST00000490398 C1orf74Q96LT6 269 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 FEM1AQ9BSK4 669 aa18.66■□□□□ 0.58
COL9A3-214ENST00000490398 SELENOOQ9BVL4 669 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms